Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00301 and ECD_00302 are separated by 1 nucleotides ECD_00302 and ECD_00303 are separated by 17 nucleotides ECD_00303 and ECD_00304 are separated by 9 nucleotides ECD_00304 and ECD_00305 overlap by 4 nucleotides
ECD_00301: ECD_00301 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 338,146 to 339,810
_00301
ECD_00302: ECD_00302 - 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, at 339,812 to 340,756
_00302
ECD_00303: ECD_00303 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 340,774 to 341,640
_00303
ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459
_00304
ECD_00305: ECD_00305 - acetaldehyde-CoA dehydrogenase II, NAD-binding, at 342,456 to 343,406
_00305
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 339.822 kb on - strand at 339.858 kb on - strand at 339.879 kb on + strand at 339.971 kb on + strand, within ECD_00302 at 339.971 kb on + strand, within ECD_00302 at 339.987 kb on - strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.142 kb on - strand, within ECD_00302 at 340.142 kb on - strand, within ECD_00302 at 340.462 kb on + strand, within ECD_00302 at 340.824 kb on - strand at 341.025 kb on + strand, within ECD_00303 at 341.127 kb on + strand, within ECD_00303 at 341.235 kb on + strand, within ECD_00303 at 341.238 kb on + strand, within ECD_00303 at 341.239 kb on - strand, within ECD_00303 at 341.410 kb on - strand, within ECD_00303 at 341.554 kb on - strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.662 kb on - strand at 341.780 kb on + strand, within ECD_00304 at 341.780 kb on + strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.791 kb on + strand, within ECD_00304 at 341.827 kb on - strand, within ECD_00304 at 341.894 kb on + strand, within ECD_00304 at 341.895 kb on - strand, within ECD_00304 at 342.028 kb on + strand, within ECD_00304 at 342.029 kb on - strand, within ECD_00304 at 342.048 kb on - strand, within ECD_00304 at 342.139 kb on + strand, within ECD_00304 at 342.139 kb on + strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.211 kb on - strand, within ECD_00304 at 342.264 kb on + strand, within ECD_00304 at 342.328 kb on - strand, within ECD_00304 at 342.347 kb on + strand, within ECD_00304 at 342.404 kb on + strand at 342.404 kb on + strand at 342.404 kb on + strand at 342.404 kb on + strand at 342.405 kb on - strand at 342.603 kb on - strand, within ECD_00305
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 339,822 - -2.3 339,858 - -0.4 339,879 + +0.7 339,971 + ECD_00302 0.17 +0.4 339,971 + ECD_00302 0.17 +0.2 339,987 - ECD_00302 0.19 -2.5 340,141 + ECD_00302 0.35 -0.1 340,141 + ECD_00302 0.35 +1.1 340,141 + ECD_00302 0.35 +0.1 340,142 - ECD_00302 0.35 -1.0 340,142 - ECD_00302 0.35 -0.7 340,462 + ECD_00302 0.69 -0.0 340,824 - -2.2 341,025 + ECD_00303 0.29 -0.2 341,127 + ECD_00303 0.41 -3.0 341,235 + ECD_00303 0.53 -1.5 341,238 + ECD_00303 0.54 -0.0 341,239 - ECD_00303 0.54 -0.7 341,410 - ECD_00303 0.73 -1.1 341,554 - -0.3 341,661 + +0.2 341,661 + -1.4 341,661 + -0.0 341,661 + -0.0 341,662 - -1.2 341,780 + ECD_00304 0.16 -1.0 341,780 + ECD_00304 0.16 -0.8 341,781 - ECD_00304 0.16 -0.4 341,781 - ECD_00304 0.16 -0.9 341,781 - ECD_00304 0.16 -0.6 341,791 + ECD_00304 0.17 -1.5 341,827 - ECD_00304 0.22 -0.6 341,894 + ECD_00304 0.30 -0.3 341,895 - ECD_00304 0.30 -0.7 342,028 + ECD_00304 0.47 +0.1 342,029 - ECD_00304 0.47 -0.0 342,048 - ECD_00304 0.49 -0.3 342,139 + ECD_00304 0.60 -1.0 342,139 + ECD_00304 0.60 +1.1 342,140 - ECD_00304 0.60 -2.4 342,140 - ECD_00304 0.60 +0.2 342,140 - ECD_00304 0.60 -0.9 342,211 - ECD_00304 0.69 -1.2 342,264 + ECD_00304 0.76 +0.3 342,328 - ECD_00304 0.84 +0.3 342,347 + ECD_00304 0.86 +0.2 342,404 + +0.5 342,404 + -0.7 342,404 + -0.5 342,404 + -0.0 342,405 - -2.1 342,603 - ECD_00305 0.15 -1.3
Or see this region's nucleotide sequence