Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00193 and ECD_00194 are separated by 110 nucleotides ECD_00194 and ECD_00195 overlap by 4 nucleotides ECD_00195 and ECD_00196 are separated by 117 nucleotides
ECD_00193: ECD_00193 - prolyl-tRNA synthetase, at 219,899 to 221,617
_00193
ECD_00194: ECD_00194 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase, SAM-dependent, at 221,728 to 222,435
_00194
ECD_00195: ECD_00195 - putative outer membrane protein, at 222,432 to 222,836
_00195
ECD_00196: ECD_00196 - DL-methionine transporter subunit, at 222,954 to 223,769
_00196
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 221.982 kb on - strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.024 kb on - strand, within ECD_00194 at 222.132 kb on + strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.311 kb on + strand, within ECD_00194 at 222.409 kb on + strand at 222.464 kb on + strand at 222.468 kb on + strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.515 kb on + strand, within ECD_00195 at 222.569 kb on + strand, within ECD_00195 at 222.681 kb on - strand, within ECD_00195 at 222.683 kb on - strand, within ECD_00195 at 222.810 kb on + strand at 222.811 kb on - strand at 222.837 kb on - strand at 222.837 kb on - strand at 222.852 kb on + strand at 222.853 kb on - strand at 222.929 kb on - strand at 222.929 kb on - strand at 223.022 kb on - strand at 223.118 kb on + strand, within ECD_00196 at 223.156 kb on + strand, within ECD_00196 at 223.156 kb on + strand, within ECD_00196 at 223.157 kb on - strand, within ECD_00196 at 223.157 kb on - strand, within ECD_00196 at 223.157 kb on - strand, within ECD_00196 at 223.157 kb on - strand, within ECD_00196 at 223.349 kb on + strand, within ECD_00196
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 221,982 - ECD_00194 0.36 +0.5 222,023 + ECD_00194 0.42 -0.9 222,023 + ECD_00194 0.42 +0.2 222,024 - ECD_00194 0.42 -0.9 222,132 + ECD_00194 0.57 +0.4 222,133 - ECD_00194 0.57 -1.2 222,133 - ECD_00194 0.57 -0.8 222,311 + ECD_00194 0.82 -1.4 222,409 + -0.7 222,464 + -1.1 222,468 + -0.5 222,469 - +0.5 222,469 - -0.3 222,469 - +0.4 222,469 - +0.6 222,515 + ECD_00195 0.20 -0.4 222,569 + ECD_00195 0.34 +0.4 222,681 - ECD_00195 0.61 +0.1 222,683 - ECD_00195 0.62 -0.9 222,810 + +0.4 222,811 - -0.4 222,837 - -1.8 222,837 - +0.4 222,852 + -1.1 222,853 - -0.1 222,929 - +0.7 222,929 - +0.2 223,022 - -1.3 223,118 + ECD_00196 0.20 -1.7 223,156 + ECD_00196 0.25 -1.9 223,156 + ECD_00196 0.25 -1.7 223,157 - ECD_00196 0.25 +0.5 223,157 - ECD_00196 0.25 -0.6 223,157 - ECD_00196 0.25 -1.2 223,157 - ECD_00196 0.25 -0.1 223,349 + ECD_00196 0.48 -0.3
Or see this region's nucleotide sequence