Strain Fitness in Escherichia coli BL21 around ECD_00185

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00184 and ECD_00185 are separated by 56 nucleotidesECD_00185 and ECD_00186 are separated by 64 nucleotides ECD_00184: ECD_00184 - lysine decarboxylase 2, constitutive, at 212,522 to 214,663 _00184 ECD_00185: ECD_00185 - putative lyase, at 214,720 to 215,109 _00185 ECD_00186: ECD_00186 - tRNA(Ile)-lysidine synthetase, at 215,174 to 216,472 _00186 Position (kb) 214 215 216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 213.877 kb on + strand, within ECD_00184at 213.970 kb on + strand, within ECD_00184at 213.970 kb on + strand, within ECD_00184at 213.970 kb on + strand, within ECD_00184at 213.971 kb on - strand, within ECD_00184at 213.971 kb on - strand, within ECD_00184at 214.225 kb on + strand, within ECD_00184at 214.241 kb on + strand, within ECD_00184at 214.270 kb on + strand, within ECD_00184at 214.277 kb on - strand, within ECD_00184at 214.304 kb on - strand, within ECD_00184at 214.304 kb on - strand, within ECD_00184at 214.304 kb on - strand, within ECD_00184at 214.405 kb on + strand, within ECD_00184at 214.416 kb on + strand, within ECD_00184at 214.462 kb on + strandat 214.462 kb on + strandat 214.638 kb on + strandat 214.662 kb on - strandat 214.789 kb on + strand, within ECD_00185at 214.879 kb on + strand, within ECD_00185at 214.880 kb on - strand, within ECD_00185at 214.880 kb on - strand, within ECD_00185

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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213,877 + ECD_00184 0.63 -1.9
213,970 + ECD_00184 0.68 -0.6
213,970 + ECD_00184 0.68 +0.2
213,970 + ECD_00184 0.68 +0.4
213,971 - ECD_00184 0.68 -0.1
213,971 - ECD_00184 0.68 -1.8
214,225 + ECD_00184 0.80 -1.1
214,241 + ECD_00184 0.80 -1.6
214,270 + ECD_00184 0.82 -0.8
214,277 - ECD_00184 0.82 -1.2
214,304 - ECD_00184 0.83 -1.1
214,304 - ECD_00184 0.83 -0.6
214,304 - ECD_00184 0.83 -1.4
214,405 + ECD_00184 0.88 -0.7
214,416 + ECD_00184 0.88 -0.4
214,462 + -3.1
214,462 + -3.4
214,638 + -0.8
214,662 - -2.3
214,789 + ECD_00185 0.18 -1.6
214,879 + ECD_00185 0.41 -1.8
214,880 - ECD_00185 0.41 -3.9
214,880 - ECD_00185 0.41 -1.4

Or see this region's nucleotide sequence