Strain Fitness in Escherichia coli BL21 around ECD_00049

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00047 and ECD_00048 overlap by 4 nucleotidesECD_00048 and ECD_00049 are separated by 56 nucleotidesECD_00049 and ECD_00050 are separated by 107 nucleotidesECD_00050 and ECD_00051 overlap by 8 nucleotides ECD_00047: ECD_00047 - putative oxidoreductase, at 48,376 to 49,662 _00047 ECD_00048: ECD_00048 - putative 4Fe-4S ferredoxin-type protein, at 49,659 to 49,946 _00048 ECD_00049: ECD_00049 - putative MFS sugar transporter; membrane protein, at 50,003 to 51,334 _00049 ECD_00050: ECD_00050 - potassium-efflux system ancillary protein for KefC, glutathione-regulated; quinone oxidoreductase, FMN-dependent, at 51,442 to 51,972 _00050 ECD_00051: ECD_00051 - potassium:proton antiporter, at 51,965 to 53,827 _00051 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.800 kb on + strand, within ECD_00048at 49.800 kb on + strand, within ECD_00048at 49.801 kb on - strand, within ECD_00048at 49.801 kb on - strand, within ECD_00048at 49.958 kb on + strandat 49.958 kb on + strandat 50.096 kb on + strandat 50.097 kb on - strandat 50.100 kb on + strandat 50.101 kb on - strandat 50.101 kb on - strandat 50.107 kb on - strandat 50.228 kb on - strand, within ECD_00049at 50.347 kb on + strand, within ECD_00049at 50.456 kb on + strand, within ECD_00049at 50.457 kb on - strand, within ECD_00049at 50.457 kb on - strand, within ECD_00049at 50.643 kb on + strand, within ECD_00049at 50.644 kb on - strand, within ECD_00049at 50.866 kb on + strand, within ECD_00049at 50.878 kb on + strand, within ECD_00049at 50.878 kb on + strand, within ECD_00049at 50.890 kb on + strand, within ECD_00049at 51.012 kb on + strand, within ECD_00049at 51.033 kb on - strand, within ECD_00049at 51.074 kb on + strand, within ECD_00049at 51.098 kb on + strand, within ECD_00049at 51.127 kb on + strand, within ECD_00049at 51.128 kb on - strand, within ECD_00049at 51.191 kb on + strand, within ECD_00049at 51.213 kb on + strandat 51.304 kb on + strandat 51.370 kb on - strandat 51.391 kb on + strandat 51.391 kb on + strandat 51.392 kb on - strandat 51.393 kb on + strandat 51.393 kb on + strandat 51.399 kb on + strandat 51.438 kb on - strandat 51.438 kb on - strandat 51.442 kb on - strandat 51.442 kb on - strandat 51.457 kb on + strandat 51.556 kb on + strand, within ECD_00050at 51.841 kb on + strand, within ECD_00050at 51.888 kb on + strand, within ECD_00050at 51.888 kb on + strand, within ECD_00050at 51.889 kb on - strand, within ECD_00050at 51.889 kb on - strand, within ECD_00050at 51.928 kb on + strandat 51.928 kb on + strandat 51.928 kb on + strandat 51.928 kb on + strandat 51.929 kb on - strandat 51.929 kb on - strandat 51.929 kb on - strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.931 kb on - strandat 51.976 kb on + strandat 51.977 kb on - strandat 51.998 kb on + strandat 52.168 kb on + strand, within ECD_00051at 52.168 kb on + strand, within ECD_00051

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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49,056 + ECD_00047 0.53 -0.7
49,056 + ECD_00047 0.53 -0.5
49,056 + ECD_00047 0.53 -0.0
49,056 + ECD_00047 0.53 +0.3
49,297 - ECD_00047 0.72 -0.1
49,297 - ECD_00047 0.72 -0.3
49,297 - ECD_00047 0.72 -0.2
49,458 + ECD_00047 0.84 -0.8
49,458 + ECD_00047 0.84 -1.2
49,458 + ECD_00047 0.84 +0.7
49,458 + ECD_00047 0.84 +0.5
49,458 + ECD_00047 0.84 +3.6
49,458 + ECD_00047 0.84 -0.0
49,459 - ECD_00047 0.84 -0.8
49,459 - ECD_00047 0.84 +0.4
49,459 - ECD_00047 0.84 -0.7
49,459 - ECD_00047 0.84 +0.2
49,800 + ECD_00048 0.49 +1.8
49,800 + ECD_00048 0.49 +1.1
49,801 - ECD_00048 0.49 +0.0
49,801 - ECD_00048 0.49 -1.0
49,958 + +0.3
49,958 + -0.9
50,096 + -0.6
50,097 - -0.5
50,100 + +0.6
50,101 - -0.8
50,101 - +0.4
50,107 - +0.1
50,228 - ECD_00049 0.17 -1.0
50,347 + ECD_00049 0.26 -0.1
50,456 + ECD_00049 0.34 +0.5
50,457 - ECD_00049 0.34 +0.6
50,457 - ECD_00049 0.34 -1.2
50,643 + ECD_00049 0.48 -1.1
50,644 - ECD_00049 0.48 -0.7
50,866 + ECD_00049 0.65 +0.1
50,878 + ECD_00049 0.66 +0.1
50,878 + ECD_00049 0.66 -0.6
50,890 + ECD_00049 0.67 +0.2
51,012 + ECD_00049 0.76 +0.3
51,033 - ECD_00049 0.77 -0.8
51,074 + ECD_00049 0.80 +1.5
51,098 + ECD_00049 0.82 +0.7
51,127 + ECD_00049 0.84 +0.3
51,128 - ECD_00049 0.84 -0.2
51,191 + ECD_00049 0.89 +0.2
51,213 + -0.2
51,304 + -0.6
51,370 - -1.5
51,391 + -0.8
51,391 + -0.6
51,392 - +0.1
51,393 + -0.4
51,393 + -0.1
51,399 + -2.5
51,438 - -0.3
51,438 - -0.8
51,442 - -1.6
51,442 - -1.9
51,457 + -0.6
51,556 + ECD_00050 0.21 -0.3
51,841 + ECD_00050 0.75 +0.3
51,888 + ECD_00050 0.84 +0.8
51,888 + ECD_00050 0.84 +0.4
51,889 - ECD_00050 0.84 -0.1
51,889 - ECD_00050 0.84 +0.4
51,928 + +0.2
51,928 + +0.3
51,928 + +0.7
51,928 + +0.3
51,929 - -1.1
51,929 - +0.3
51,929 - -0.5
51,930 + +0.7
51,930 + +0.8
51,930 + -1.1
51,930 + -1.5
51,930 + +1.0
51,930 + +2.1
51,930 + +0.2
51,931 - -0.9
51,976 + +0.7
51,977 - +0.4
51,998 + +1.2
52,168 + ECD_00051 0.11 +0.5
52,168 + ECD_00051 0.11 +0.0

Or see this region's nucleotide sequence