Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0933

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,065,839	+		Psyr_0932	0.70	+1.9
1,065,839	+		Psyr_0932	0.70	+0.3
1,065,839	+		Psyr_0932	0.70	-2.6
1,065,839	+		Psyr_0932	0.70	+2.5
1,065,839	+		Psyr_0932	0.70	+1.1
1,065,839	+		Psyr_0932	0.70	+1.2
1,065,839	+		Psyr_0932	0.70	-2.2
1,065,839	+		Psyr_0932	0.70	-2.1
1,065,839	+		Psyr_0932	0.70	+0.1
1,065,840	-		Psyr_0932	0.70	-1.9
1,065,840	-		Psyr_0932	0.70	+2.6
1,065,840	-		Psyr_0932	0.70	-1.8
1,065,840	-		Psyr_0932	0.70	-3.7
1,065,840	-		Psyr_0932	0.70	-3.1
1,065,840	-		Psyr_0932	0.70	+1.2
1,065,840	-		Psyr_0932	0.70	-2.3
1,065,840	-		Psyr_0932	0.70	+0.8
1,065,840	-		Psyr_0932	0.70	+1.5
1,065,867	-		Psyr_0932	0.73	-1.6
1,065,962	+		Psyr_0932	0.84	+0.9
1,066,032	+				-2.8
1,066,032	+				-0.3
1,066,032	+				-0.7
1,066,032	+				+1.8
1,066,033	-				+1.1
1,066,033	-				-0.0
1,066,033	-				-0.6
1,066,033	-				-0.9
1,066,036	+				+4.4
1,066,036	+				-0.5
1,066,036	+				+1.2
1,066,036	+				+0.4
1,066,036	+				+1.8
1,066,036	+				-2.6
1,066,036	+				+1.5
1,066,036	+				-0.3
1,066,037	-				+0.5
1,066,037	-				-1.1
1,066,037	-				-1.8
1,066,037	-				-2.6
1,066,037	-				-0.1
1,066,037	-				-0.8
1,066,037	-				+0.5
1,066,078	-				+0.5
1,066,141	+				+2.2
1,066,181	+				+2.6
1,066,182	-				+0.3
1,066,182	-				-1.6
1,066,185	+				+1.4
1,066,185	+				-1.3
1,066,186	-				-2.5
1,066,186	-				-0.7
1,066,186	-				-3.1
1,066,186	-				-2.2
1,066,220	+				-3.3
1,066,251	-				+1.5
1,066,251	-				+1.9
1,066,396	+				-2.7
1,066,439	+				-0.4
1,066,439	+				+1.6
1,066,439	+				+0.1
1,066,460	+				+1.2
1,066,461	-				+0.4
1,066,461	-				-0.3
1,066,461	-				-0.2
1,066,464	+				-3.7
1,066,464	+				+0.6
1,066,465	-				-1.9
1,066,465	-				+2.2
1,066,465	-				+1.4
1,066,467	+				+1.1
1,066,491	-				+0.5
1,066,495	+				-1.6
1,066,546	-				-0.3
1,066,546	-				+1.1
1,066,625	+				+0.0
1,066,659	+				-0.5
1,066,659	+				+1.0
1,066,659	+				+1.8
1,066,660	-				+1.2
1,066,660	-				-1.3
1,066,660	-				+1.8
1,066,709	+				-0.0
1,066,710	-				+1.3
1,066,740	-				-1.6
1,066,793	+				+1.3
1,066,793	+				+1.4
1,066,793	+				-0.1
1,066,793	+				-1.8
1,066,793	+				+0.1
1,066,793	+				+0.6
1,066,793	+				-0.1
1,066,794	-				+1.2
1,066,794	-				+0.2
1,066,794	-				-0.8
1,066,826	+				+0.8
1,066,826	+				+0.2
1,066,835	+				+1.0
1,066,836	-				-1.5
1,066,836	-				-0.2
1,066,836	-				+2.3
1,066,856	+				-1.3
1,066,895	+				+0.2
1,066,896	-				+0.2
1,066,924	+				-0.2
1,066,924	+				-4.0
1,066,953	+				-0.4
1,066,953	+				+0.9
1,066,953	+				-2.2
1,066,953	+				-0.3
1,066,953	+				+0.2
1,066,954	-				+0.9
1,066,954	-				+2.2
1,066,954	-				-1.3
1,066,954	-				-1.6
1,066,989	-				+0.8
1,067,042	+		Psyr_0933	0.12	-1.9
1,067,042	+		Psyr_0933	0.12	-1.6
1,067,042	+		Psyr_0933	0.12	-2.9
1,067,042	+		Psyr_0933	0.12	+0.9
1,067,043	-		Psyr_0933	0.12	-0.1
1,067,043	-		Psyr_0933	0.12	+1.7
1,067,087	+		Psyr_0933	0.14	-0.7
1,067,128	-		Psyr_0933	0.17	-0.7
1,067,269	-		Psyr_0933	0.25	-1.9
1,067,269	-		Psyr_0933	0.25	+0.8
1,067,287	+		Psyr_0933	0.26	-0.6
1,067,287	+		Psyr_0933	0.26	+0.8
1,067,288	-		Psyr_0933	0.26	-0.7
1,067,288	-		Psyr_0933	0.26	+1.1
1,067,317	+		Psyr_0933	0.27	+0.1
1,067,317	+		Psyr_0933	0.27	+0.2
1,067,318	-		Psyr_0933	0.27	+0.7
1,067,318	-		Psyr_0933	0.27	+1.7
1,067,349	+		Psyr_0933	0.29	+3.1
1,067,350	-		Psyr_0933	0.29	+0.4
1,067,350	-		Psyr_0933	0.29	+1.2
1,067,350	-		Psyr_0933	0.29	+4.4
1,067,350	-		Psyr_0933	0.29	+0.4
1,067,561	+		Psyr_0933	0.41	+1.5
1,067,562	-		Psyr_0933	0.41	+3.0
1,067,562	-		Psyr_0933	0.41	-0.0
1,067,616	+		Psyr_0933	0.44	-2.3
1,067,616	+		Psyr_0933	0.44	+2.1
1,067,616	+		Psyr_0933	0.44	+0.6
1,067,616	+		Psyr_0933	0.44	-0.4
1,067,617	-		Psyr_0933	0.45	-1.3
1,067,617	-		Psyr_0933	0.45	+0.9
1,067,628	-		Psyr_0933	0.45	+0.6
1,067,705	+		Psyr_0933	0.50	-2.5
1,067,711	+		Psyr_0933	0.50	-3.8
1,067,711	+		Psyr_0933	0.50	+1.2
1,067,745	+		Psyr_0933	0.52	-2.2
1,067,746	-		Psyr_0933	0.52	+0.4
1,067,822	+		Psyr_0933	0.56	-2.7
1,067,822	+		Psyr_0933	0.56	+0.8
1,067,822	+		Psyr_0933	0.56	+0.2
1,067,822	+		Psyr_0933	0.56	+0.0
1,067,822	+		Psyr_0933	0.56	+0.3
1,067,822	+		Psyr_0933	0.56	-4.5
1,067,823	-		Psyr_0933	0.56	-3.1
1,067,823	-		Psyr_0933	0.56	+2.2
1,067,823	-		Psyr_0933	0.56	+0.4
1,067,823	-		Psyr_0933	0.56	-3.1
1,067,823	-		Psyr_0933	0.56	+1.8
1,067,823	-		Psyr_0933	0.56	+0.8
1,067,823	-		Psyr_0933	0.56	-1.3
1,067,823	-		Psyr_0933	0.56	-0.3
1,067,823	-		Psyr_0933	0.56	+0.7
1,067,823	-		Psyr_0933	0.56	+0.4
1,067,823	-		Psyr_0933	0.56	+0.7
1,067,823	-		Psyr_0933	0.56	+2.0
1,067,842	+		Psyr_0933	0.57	+2.2
1,067,874	-		Psyr_0933	0.59	+0.3
1,067,918	+		Psyr_0933	0.62	+2.2
1,068,104	+		Psyr_0933	0.72	+1.0
1,068,105	-		Psyr_0933	0.72	-0.8
1,068,275	+		Psyr_0933	0.82	-0.9
1,068,275	+		Psyr_0933	0.82	+1.0
1,068,275	+		Psyr_0933	0.82	-0.6
1,068,275	+		Psyr_0933	0.82	-0.3
1,068,275	+		Psyr_0933	0.82	+0.1
1,068,276	-		Psyr_0933	0.82	-1.1
1,068,276	-		Psyr_0933	0.82	+3.8
1,068,276	-		Psyr_0933	0.82	+1.5
1,068,276	-		Psyr_0933	0.82	+0.1
1,068,276	-		Psyr_0933	0.82	-1.4
1,068,276	-		Psyr_0933	0.82	-0.2
1,068,276	-		Psyr_0933	0.82	-3.0
1,068,276	-		Psyr_0933	0.82	+0.8
1,068,276	-		Psyr_0933	0.82	-0.4
1,068,276	-		Psyr_0933	0.82	-1.0
1,068,279	+		Psyr_0933	0.82	+0.6
1,068,279	+		Psyr_0933	0.82	-1.4
1,068,279	+		Psyr_0933	0.82	-1.3
1,068,279	+		Psyr_0933	0.82	+0.2
1,068,279	+		Psyr_0933	0.82	-1.1
1,068,279	+		Psyr_0933	0.82	+1.7
1,068,280	-		Psyr_0933	0.82	+1.6
1,068,280	-		Psyr_0933	0.82	-2.1
1,068,280	-		Psyr_0933	0.82	-1.6
1,068,280	-		Psyr_0933	0.82	-0.3
1,068,350	+		Psyr_0933	0.86	+0.3
1,068,351	-		Psyr_0933	0.86	-2.5
1,068,351	-		Psyr_0933	0.86	+0.5
1,068,372	-		Psyr_0933	0.88	+1.7
1,068,612	+				+0.5
1,068,613	-				-1.6
1,068,613	-				-2.8
1,068,757	+		Psyr_0934	0.12	-2.1
1,068,773	+		Psyr_0934	0.13	-0.6
1,068,882	-		Psyr_0934	0.21	+1.0
1,068,882	-		Psyr_0934	0.21	+1.0
1,069,015	-		Psyr_0934	0.31	+0.8
1,069,032	+		Psyr_0934	0.32	-0.5
1,069,043	+		Psyr_0934	0.33	+0.1
1,069,062	-		Psyr_0934	0.35	-1.7
1,069,062	-		Psyr_0934	0.35	+1.0
1,069,189	+		Psyr_0934	0.44	+1.6
1,069,331	+		Psyr_0934	0.55	+0.2
1,069,331	+		Psyr_0934	0.55	-0.0
1,069,331	+		Psyr_0934	0.55	-1.2
1,069,331	+		Psyr_0934	0.55	+0.1
1,069,332	-		Psyr_0934	0.55	-2.1
1,069,332	-		Psyr_0934	0.55	-2.9
1,069,332	-		Psyr_0934	0.55	+1.7
1,069,403	+		Psyr_0934	0.60	-1.9
1,069,403	+		Psyr_0934	0.60	+0.7
1,069,403	+		Psyr_0934	0.60	-1.7
1,069,403	+		Psyr_0934	0.60	+0.4
1,069,403	+		Psyr_0934	0.60	+0.4
1,069,403	+		Psyr_0934	0.60	-0.8
1,069,404	-		Psyr_0934	0.60	-3.5
1,069,404	-		Psyr_0934	0.60	-2.8
1,069,404	-		Psyr_0934	0.60	+1.1
1,069,412	+		Psyr_0934	0.61	+0.3
1,069,412	+		Psyr_0934	0.61	-0.3
1,069,412	+		Psyr_0934	0.61	-2.9
1,069,412	+		Psyr_0934	0.61	-0.0
1,069,413	-		Psyr_0934	0.61	+1.1
1,069,413	-		Psyr_0934	0.61	-2.8
1,069,413	-		Psyr_0934	0.61	+0.9
1,069,413	-		Psyr_0934	0.61	+0.0
1,069,424	+		Psyr_0934	0.62	+0.2
1,069,446	+		Psyr_0934	0.64	-2.7
1,069,505	+		Psyr_0934	0.68	-1.0
1,069,524	+		Psyr_0934	0.70	+0.5
1,069,525	-		Psyr_0934	0.70	+0.0