Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0920

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,045,071	+		Psyr_0919	0.53	-3.3
1,045,072	-		Psyr_0919	0.53	+0.0
1,045,180	-		Psyr_0919	0.59	-1.4
1,045,202	+		Psyr_0919	0.60	-3.9
1,045,203	-		Psyr_0919	0.60	-1.9
1,045,248	+		Psyr_0919	0.62	+3.6
1,045,248	+		Psyr_0919	0.62	+0.2
1,045,285	-		Psyr_0919	0.64	-1.8
1,045,325	-		Psyr_0919	0.66	+0.1
1,045,351	-		Psyr_0919	0.68	-1.9
1,045,380	+		Psyr_0919	0.69	+2.6
1,045,381	-		Psyr_0919	0.69	-1.8
1,045,381	-		Psyr_0919	0.69	-1.6
1,045,567	-		Psyr_0919	0.79	+1.2
1,045,579	+		Psyr_0919	0.79	-2.9
1,045,579	+		Psyr_0919	0.79	-2.1
1,045,580	-		Psyr_0919	0.79	-2.2
1,045,580	-		Psyr_0919	0.79	-1.9
1,045,580	-		Psyr_0919	0.79	-0.0
1,045,608	+		Psyr_0919	0.81	+0.4
1,045,609	-		Psyr_0919	0.81	-0.8
1,045,609	-		Psyr_0919	0.81	-3.8
1,045,611	+		Psyr_0919	0.81	-1.7
1,045,611	+		Psyr_0919	0.81	-3.9
1,045,611	+		Psyr_0919	0.81	-2.8
1,045,611	+		Psyr_0919	0.81	-2.6
1,045,611	+		Psyr_0919	0.81	-2.9
1,045,611	+		Psyr_0919	0.81	-3.0
1,045,612	-		Psyr_0919	0.81	-0.5
1,045,612	-		Psyr_0919	0.81	-3.7
1,045,612	-		Psyr_0919	0.81	-1.4
1,045,612	-		Psyr_0919	0.81	-0.5
1,045,612	-		Psyr_0919	0.81	-3.2
1,045,703	+		Psyr_0919	0.86	+1.2
1,045,703	+		Psyr_0919	0.86	-3.0
1,045,703	+		Psyr_0919	0.86	-0.6
1,045,704	-		Psyr_0919	0.86	-3.8
1,045,704	-		Psyr_0919	0.86	-3.4
1,045,704	-		Psyr_0919	0.86	-1.9
1,045,743	+		Psyr_0919	0.88	+0.5
1,045,744	-		Psyr_0919	0.88	-1.6
1,045,744	-		Psyr_0919	0.88	-3.9
1,045,754	+		Psyr_0919	0.88	-1.8
1,045,773	+		Psyr_0919	0.89	-1.4
1,045,774	-		Psyr_0919	0.89	-1.1
1,045,786	+				+1.6
1,045,836	+				-0.9
1,045,837	-				-3.7
1,045,837	-				-0.7
1,045,869	+				-0.2
1,045,983	-				+2.2
1,045,983	-				-0.4
1,045,996	+				-0.6
1,046,093	-				-1.9
1,046,093	-				-0.8
1,046,093	-				-1.8
1,046,093	-				-1.1
1,046,137	+				-0.6
1,046,137	+				-2.9
1,046,137	+				-0.3
1,046,137	+				-1.8
1,046,138	-				-2.7
1,046,138	-				+1.4
1,046,138	-				+1.0
1,046,159	+				+0.4
1,046,160	-				-3.7
1,046,176	+				-1.2
1,046,176	+				+0.1
1,046,176	+				-1.8
1,046,177	-				-1.4
1,046,177	-				-1.6
1,046,177	-				-2.1
1,046,177	-				-4.2
1,046,177	-				-1.1
1,046,180	+				+2.3
1,046,180	+				-2.9
1,046,180	+				-1.1
1,046,180	+				-0.7
1,046,180	+				+0.7
1,046,180	+				-2.2
1,046,180	+				-1.6
1,046,180	+				+0.6
1,046,180	+				-3.1
1,046,180	+				+0.3
1,046,180	+				-2.1
1,046,180	+				-1.4
1,046,180	+				-0.3
1,046,180	+				+4.2
1,046,180	+				-3.4
1,046,180	+				-1.8
1,046,180	+				-0.4
1,046,180	+				-3.5
1,046,181	-				-3.2
1,046,181	-				-3.9
1,046,181	-				-1.3
1,046,181	-				-0.9
1,046,181	-				-0.9
1,046,182	+				-1.2
1,046,182	+				+0.4
1,046,182	+				-0.1
1,046,182	+				-2.1
1,046,182	+				-1.1
1,046,182	+				-4.4
1,046,182	+				-2.4
1,046,182	+				-3.2
1,046,183	-				-0.4
1,046,183	-				+0.4
1,046,183	-				-1.5
1,046,183	-				-3.8
1,046,183	-				-1.3
1,046,183	-				-2.4
1,046,183	-				-3.6
1,046,183	-				-0.8
1,046,183	-				-2.9
1,046,183	-				-2.9
1,046,183	-				-1.6
1,046,308	-		Psyr_0920	0.13	-4.2
1,046,373	+		Psyr_0920	0.16	-1.9
1,046,374	-		Psyr_0920	0.16	-0.8
1,046,374	-		Psyr_0920	0.16	-2.4
1,046,374	-		Psyr_0920	0.16	-4.9
1,046,374	-		Psyr_0920	0.16	-0.0
1,046,374	-		Psyr_0920	0.16	+1.2
1,046,374	-		Psyr_0920	0.16	-2.6
1,046,374	-		Psyr_0920	0.16	-0.4
1,046,406	+		Psyr_0920	0.17	-3.2
1,046,406	+		Psyr_0920	0.17	-0.1
1,046,406	+		Psyr_0920	0.17	-3.7
1,046,406	+		Psyr_0920	0.17	-1.0
1,046,407	-		Psyr_0920	0.17	-1.1
1,046,414	+		Psyr_0920	0.18	-0.9
1,046,414	+		Psyr_0920	0.18	-1.3
1,046,415	-		Psyr_0920	0.18	+1.6
1,046,433	+		Psyr_0920	0.18	-0.3
1,046,434	-		Psyr_0920	0.18	+2.0
1,046,436	+		Psyr_0920	0.18	-2.7
1,046,436	+		Psyr_0920	0.18	-0.4
1,046,437	-		Psyr_0920	0.18	-3.2
1,046,437	-		Psyr_0920	0.18	-0.2
1,046,445	-		Psyr_0920	0.19	-2.5
1,046,449	+		Psyr_0920	0.19	-2.5
1,046,449	+		Psyr_0920	0.19	-3.2
1,046,471	+		Psyr_0920	0.20	-2.1
1,046,521	+		Psyr_0920	0.22	+1.2
1,046,522	-		Psyr_0920	0.22	-1.1
1,046,542	+		Psyr_0920	0.23	-3.2
1,046,542	+		Psyr_0920	0.23	-0.4
1,046,550	-		Psyr_0920	0.23	-0.6
1,046,706	+		Psyr_0920	0.29	-1.9
1,046,706	+		Psyr_0920	0.29	-2.7
1,046,706	+		Psyr_0920	0.29	-1.4
1,046,707	-		Psyr_0920	0.29	+0.7
1,046,707	-		Psyr_0920	0.29	-3.5
1,046,707	-		Psyr_0920	0.29	+0.1
1,046,707	-		Psyr_0920	0.29	+0.4
1,046,707	-		Psyr_0920	0.29	-3.8
1,046,708	+		Psyr_0920	0.29	-1.3
1,046,709	-		Psyr_0920	0.29	-1.9
1,046,709	-		Psyr_0920	0.29	-2.7
1,046,729	+		Psyr_0920	0.30	+0.2
1,046,833	+		Psyr_0920	0.34	-1.8
1,046,845	-		Psyr_0920	0.35	-2.4
1,046,874	+		Psyr_0920	0.36	-3.3
1,046,890	+		Psyr_0920	0.37	+1.0
1,046,890	+		Psyr_0920	0.37	-3.2
1,046,890	+		Psyr_0920	0.37	-1.9
1,046,890	+		Psyr_0920	0.37	-1.2
1,046,890	+		Psyr_0920	0.37	-0.8
1,046,891	-		Psyr_0920	0.37	-2.2
1,046,891	-		Psyr_0920	0.37	+0.4
1,046,891	-		Psyr_0920	0.37	-1.6
1,046,891	-		Psyr_0920	0.37	-3.6
1,046,891	-		Psyr_0920	0.37	-1.4
1,046,891	-		Psyr_0920	0.37	-1.9
1,046,891	-		Psyr_0920	0.37	-3.2
1,046,891	-		Psyr_0920	0.37	-0.8
1,046,891	-		Psyr_0920	0.37	-1.9
1,046,972	+		Psyr_0920	0.40	-2.2
1,046,973	-		Psyr_0920	0.40	-1.9
1,046,998	+		Psyr_0920	0.41	-2.1
1,046,999	-		Psyr_0920	0.41	-2.5
1,046,999	-		Psyr_0920	0.41	-2.9
1,047,058	+		Psyr_0920	0.43	-3.8
1,047,059	-		Psyr_0920	0.43	-3.3
1,047,059	-		Psyr_0920	0.43	-2.3
1,047,068	-		Psyr_0920	0.44	-3.9
1,047,098	+		Psyr_0920	0.45	-2.9
1,047,099	-		Psyr_0920	0.45	-1.1
1,047,157	+		Psyr_0920	0.47	-3.6
1,047,157	+		Psyr_0920	0.47	-1.4
1,047,158	-		Psyr_0920	0.47	-0.3
1,047,158	-		Psyr_0920	0.47	-2.0
1,047,349	+		Psyr_0920	0.55	-3.8
1,047,349	+		Psyr_0920	0.55	-3.5
1,047,349	+		Psyr_0920	0.55	-1.6
1,047,349	+		Psyr_0920	0.55	-4.0
1,047,350	-		Psyr_0920	0.55	+0.2
1,047,350	-		Psyr_0920	0.55	-2.7
1,047,350	-		Psyr_0920	0.55	-2.8
1,047,384	-		Psyr_0920	0.56	-0.1
1,047,384	-		Psyr_0920	0.56	-2.8
1,047,398	-		Psyr_0920	0.57	-0.4
1,047,459	+		Psyr_0920	0.59	-3.2
1,047,459	+		Psyr_0920	0.59	-1.2
1,047,459	+		Psyr_0920	0.59	-3.0
1,047,459	+		Psyr_0920	0.59	-3.6
1,047,460	-		Psyr_0920	0.59	-4.1
1,047,460	-		Psyr_0920	0.59	-2.7
1,047,477	+		Psyr_0920	0.60	-2.4
1,047,477	+		Psyr_0920	0.60	+0.4
1,047,477	+		Psyr_0920	0.60	-4.6
1,047,478	-		Psyr_0920	0.60	-2.5
1,047,478	-		Psyr_0920	0.60	-1.1
1,047,480	+		Psyr_0920	0.60	-1.8
1,047,480	+		Psyr_0920	0.60	-2.2
1,047,481	-		Psyr_0920	0.60	-3.7
1,047,481	-		Psyr_0920	0.60	-1.6
1,047,483	+		Psyr_0920	0.60	-3.7
1,047,483	+		Psyr_0920	0.60	-2.7
1,047,484	-		Psyr_0920	0.60	+0.1
1,047,489	-		Psyr_0920	0.61	-1.8
1,047,510	+		Psyr_0920	0.61	-0.3
1,047,510	+		Psyr_0920	0.61	-1.4
1,047,510	+		Psyr_0920	0.61	-1.1
1,047,510	+		Psyr_0920	0.61	-1.9
1,047,510	+		Psyr_0920	0.61	-2.8
1,047,510	+		Psyr_0920	0.61	-4.3
1,047,510	+		Psyr_0920	0.61	-3.8
1,047,510	+		Psyr_0920	0.61	+1.6
1,047,510	+		Psyr_0920	0.61	-0.8
1,047,510	+		Psyr_0920	0.61	-2.6
1,047,511	-		Psyr_0920	0.61	-0.8
1,047,511	-		Psyr_0920	0.61	-0.4
1,047,511	-		Psyr_0920	0.61	-3.5
1,047,511	-		Psyr_0920	0.61	-1.1
1,047,511	-		Psyr_0920	0.61	-0.0
1,047,511	-		Psyr_0920	0.61	-2.7
1,047,511	-		Psyr_0920	0.61	+0.7
1,047,511	-		Psyr_0920	0.61	-3.9
1,047,567	+		Psyr_0920	0.64	-2.4
1,047,567	+		Psyr_0920	0.64	-0.6
1,047,567	+		Psyr_0920	0.64	-1.4
1,047,567	+		Psyr_0920	0.64	-1.1
1,047,567	+		Psyr_0920	0.64	-0.6
1,047,567	+		Psyr_0920	0.64	-3.5
1,047,567	+		Psyr_0920	0.64	-1.8
1,047,567	+		Psyr_0920	0.64	-1.1
1,047,567	+		Psyr_0920	0.64	+0.9
1,047,567	+		Psyr_0920	0.64	+0.7
1,047,567	+		Psyr_0920	0.64	-0.8
1,047,567	+		Psyr_0920	0.64	-1.0
1,047,567	+		Psyr_0920	0.64	-1.9
1,047,567	+		Psyr_0920	0.64	-2.4
1,047,567	+		Psyr_0920	0.64	-2.2
1,047,567	+		Psyr_0920	0.64	-1.7
1,047,568	-		Psyr_0920	0.64	-2.2
1,047,568	-		Psyr_0920	0.64	-3.2
1,047,568	-		Psyr_0920	0.64	-3.7
1,047,568	-		Psyr_0920	0.64	-2.4
1,047,568	-		Psyr_0920	0.64	-0.7
1,047,568	-		Psyr_0920	0.64	-3.9
1,047,568	-		Psyr_0920	0.64	-3.3
1,047,568	-		Psyr_0920	0.64	-1.9
1,047,568	-		Psyr_0920	0.64	-1.5
1,047,568	-		Psyr_0920	0.64	-3.8
1,047,609	+		Psyr_0920	0.65	-0.8
1,047,644	-		Psyr_0920	0.67	+1.6
1,047,654	+		Psyr_0920	0.67	+0.2
1,047,654	+		Psyr_0920	0.67	-1.1
1,047,654	+		Psyr_0920	0.67	-2.7
1,047,654	+		Psyr_0920	0.67	-2.5
1,047,654	+		Psyr_0920	0.67	-2.4
1,047,654	+		Psyr_0920	0.67	-0.2
1,047,655	-		Psyr_0920	0.67	-2.6
1,047,655	-		Psyr_0920	0.67	-0.6
1,047,655	-		Psyr_0920	0.67	-0.8
1,047,655	-		Psyr_0920	0.67	-0.3
1,047,663	+		Psyr_0920	0.68	-1.8
1,047,850	+		Psyr_0920	0.75	+0.6
1,048,043	+		Psyr_0920	0.83	-3.0
1,048,043	+		Psyr_0920	0.83	-0.7
1,048,044	-		Psyr_0920	0.83	-0.0
1,048,044	-		Psyr_0920	0.83	-0.4
1,048,158	+		Psyr_0920	0.87	-2.4
1,048,159	-		Psyr_0920	0.87	-3.4
1,048,159	-		Psyr_0920	0.87	+0.2
1,048,159	-		Psyr_0920	0.87	-2.2
1,048,159	-		Psyr_0920	0.87	-0.0
1,048,159	-		Psyr_0920	0.87	-1.8
1,048,173	+		Psyr_0920	0.88	-3.5
1,048,174	-		Psyr_0920	0.88	-1.8
1,048,184	+		Psyr_0920	0.88	-3.6
1,048,184	+		Psyr_0920	0.88	-1.0
1,048,184	+		Psyr_0920	0.88	-2.9
1,048,185	-		Psyr_0920	0.88	-3.2
1,048,185	-		Psyr_0920	0.88	+0.2
1,048,185	-		Psyr_0920	0.88	-1.9
1,048,185	-		Psyr_0920	0.88	-2.7
1,048,185	-		Psyr_0920	0.88	-0.9
1,048,185	-		Psyr_0920	0.88	-3.4
1,048,314	+				-4.7
1,048,314	+				-0.3
1,048,314	+				-2.1
1,048,314	+				-2.4
1,048,315	-				-1.4
1,048,315	-				-0.4
1,048,315	-				-2.6
1,048,319	+				-4.3
1,048,489	+				-1.0
1,048,497	+				+1.1
1,048,497	+				-1.4
1,048,612	+				+1.3
1,048,613	-				-3.1
1,048,616	+				-2.1
1,048,637	+				-1.4
1,048,638	-				-0.3
1,048,743	+				-2.9
1,048,748	+				-3.1
1,048,748	+				-0.0
1,048,767	+				-3.2
1,048,767	+				-2.2
1,048,991	-		Psyr_0921	0.51	+0.8
1,049,230	+				-3.3