Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0873

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0872 and Psyr_0873 overlap by 4 nucleotidesPsyr_0873 and Psyr_0874 are separated by 201 nucleotidesPsyr_0874 and Psyr_0875 are separated by 2 nucleotides Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843 _0872 Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403 _0873 Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012 _0874 Psyr_0875: Psyr_0875 - outer membrane transport energization protein TonB, at 997,015 to 997,779 _0875 Position (kb) 995 996 997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 994.975 kb on + strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.976 kb on - strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 995.032 kb on + strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.283 kb on + strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.366 kb on - strand, within Psyr_0872at 995.491 kb on + strand, within Psyr_0872at 995.517 kb on + strand, within Psyr_0872at 995.517 kb on + strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.784 kb on + strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.808 kb on - strandat 995.865 kb on + strandat 995.936 kb on - strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 996.075 kb on + strand, within Psyr_0873at 996.076 kb on - strand, within Psyr_0873at 996.407 kb on + strandat 996.408 kb on - strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.498 kb on - strandat 996.503 kb on + strandat 996.504 kb on - strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.525 kb on + strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.537 kb on - strandat 996.537 kb on - strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.582 kb on + strandat 996.625 kb on + strandat 996.625 kb on + strandat 996.626 kb on - strandat 996.702 kb on + strand, within Psyr_0874at 996.702 kb on + strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.034 kb on + strandat 997.034 kb on + strandat 997.034 kb on + strandat 997.035 kb on - strandat 997.035 kb on - strandat 997.211 kb on + strand, within Psyr_0875at 997.244 kb on + strand, within Psyr_0875at 997.344 kb on + strand, within Psyr_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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994,975 + Psyr_0872 0.45 -0.5
994,975 + Psyr_0872 0.45 -3.0
994,976 - Psyr_0872 0.45 +2.3
994,979 + Psyr_0872 0.45 -2.4
995,032 + Psyr_0872 0.48 +0.5
995,198 - Psyr_0872 0.59 +2.0
995,283 + Psyr_0872 0.64 -1.3
995,284 - Psyr_0872 0.64 -0.5
995,284 - Psyr_0872 0.64 +1.2
995,296 + Psyr_0872 0.65 +0.5
995,296 + Psyr_0872 0.65 -2.1
995,296 + Psyr_0872 0.65 +1.0
995,296 + Psyr_0872 0.65 -2.5
995,296 + Psyr_0872 0.65 -0.2
995,296 + Psyr_0872 0.65 +1.7
995,296 + Psyr_0872 0.65 +2.0
995,296 + Psyr_0872 0.65 -0.8
995,296 + Psyr_0872 0.65 -2.3
995,296 + Psyr_0872 0.65 +0.3
995,297 - Psyr_0872 0.65 +0.3
995,297 - Psyr_0872 0.65 +1.2
995,297 - Psyr_0872 0.65 -2.5
995,297 - Psyr_0872 0.65 +0.8
995,297 - Psyr_0872 0.65 +0.7
995,297 - Psyr_0872 0.65 +1.6
995,302 + Psyr_0872 0.66 -0.4
995,302 + Psyr_0872 0.66 +0.4
995,302 + Psyr_0872 0.66 +0.5
995,302 + Psyr_0872 0.66 -2.4
995,303 - Psyr_0872 0.66 +0.2
995,303 - Psyr_0872 0.66 +0.9
995,303 - Psyr_0872 0.66 -0.7
995,303 - Psyr_0872 0.66 -0.8
995,303 - Psyr_0872 0.66 +0.2
995,303 - Psyr_0872 0.66 -0.0
995,303 - Psyr_0872 0.66 -1.1
995,303 - Psyr_0872 0.66 -0.6
995,303 - Psyr_0872 0.66 +0.5
995,303 - Psyr_0872 0.66 +1.1
995,366 - Psyr_0872 0.70 +0.6
995,491 + Psyr_0872 0.78 +1.0
995,517 + Psyr_0872 0.79 +0.7
995,517 + Psyr_0872 0.79 +1.7
995,578 - Psyr_0872 0.83 +1.2
995,578 - Psyr_0872 0.83 +1.0
995,784 + +0.7
995,785 - -2.3
995,785 - -1.4
995,785 - +0.3
995,785 - +0.5
995,785 - +2.8
995,808 - -1.3
995,865 + -3.9
995,936 - Psyr_0873 0.17 +0.9
995,946 + Psyr_0873 0.19 +0.9
995,946 + Psyr_0873 0.19 -0.8
995,947 - Psyr_0873 0.19 -0.9
995,947 - Psyr_0873 0.19 +0.7
995,947 - Psyr_0873 0.19 -1.4
995,947 - Psyr_0873 0.19 -0.9
995,947 - Psyr_0873 0.19 -3.7
996,075 + Psyr_0873 0.42 +1.1
996,076 - Psyr_0873 0.42 +1.7
996,407 + +0.2
996,408 - +2.6
996,481 + +0.7
996,481 + +0.2
996,481 + -4.2
996,482 - -0.8
996,482 - +0.7
996,482 - +1.0
996,497 + +0.6
996,497 + -2.3
996,497 + +0.1
996,497 + +0.4
996,497 + +1.0
996,497 + -1.6
996,498 - -0.2
996,503 + -3.5
996,504 - -1.8
996,514 + -0.4
996,514 + -0.8
996,514 + +3.5
996,514 + -2.0
996,514 + +4.0
996,514 + +1.9
996,514 + -2.9
996,515 - +1.0
996,515 - +2.2
996,515 - -0.4
996,515 - +0.8
996,515 - -0.8
996,515 - +0.2
996,525 + +1.8
996,526 - +0.4
996,526 - -2.3
996,526 - +0.9
996,526 - +0.1
996,526 - -0.8
996,536 + +0.6
996,536 + -0.4
996,536 + +2.3
996,537 - -3.1
996,537 - -0.4
996,567 + -2.4
996,567 + +0.0
996,568 - +1.2
996,568 - +1.2
996,582 + +1.2
996,625 + -3.1
996,625 + +2.1
996,626 - +0.5
996,702 + Psyr_0874 0.24 -0.1
996,702 + Psyr_0874 0.24 -0.9
996,819 + Psyr_0874 0.52 +0.9
996,819 + Psyr_0874 0.52 -0.1
996,820 - Psyr_0874 0.53 -3.1
996,820 - Psyr_0874 0.53 -0.3
996,820 - Psyr_0874 0.53 +2.5
997,018 + -0.4
997,018 + +0.5
997,018 + +0.0
997,018 + -0.8
997,018 + +0.9
997,018 + +1.3
997,018 + +0.5
997,018 + +0.3
997,019 - -0.1
997,019 - -2.3
997,019 - -2.6
997,019 - -0.2
997,019 - +1.0
997,034 + +0.3
997,034 + +0.5
997,034 + -0.1
997,035 - -2.0
997,035 - +0.5
997,211 + Psyr_0875 0.26 -2.1
997,244 + Psyr_0875 0.30 -0.7
997,344 + Psyr_0875 0.43 +0.3

Or see this region's nucleotide sequence