Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0627

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0625 and Psyr_0626 are separated by 3 nucleotidesPsyr_0626 and Psyr_0627 are separated by 241 nucleotidesPsyr_0627 and Psyr_0628 are separated by 11 nucleotides Psyr_0625: Psyr_0625 - Protein of unknown function DUF980, at 714,416 to 715,225 _0625 Psyr_0626: Psyr_0626 - DedA, at 715,229 to 715,876 _0626 Psyr_0627: Psyr_0627 - Ethanolamine ammonia-lyase light chain, at 716,118 to 716,966 _0627 Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372 _0628 Position (kb) 716 717Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 715.160 kb on + strandat 715.160 kb on + strandat 715.161 kb on - strandat 715.161 kb on - strandat 715.269 kb on - strandat 715.527 kb on + strand, within Psyr_0626at 715.528 kb on - strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.794 kb on + strand, within Psyr_0626at 715.795 kb on - strand, within Psyr_0626at 715.795 kb on - strand, within Psyr_0626at 715.804 kb on + strand, within Psyr_0626at 715.804 kb on + strand, within Psyr_0626at 715.804 kb on + strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.834 kb on - strandat 715.852 kb on + strandat 715.852 kb on + strandat 715.852 kb on + strandat 715.940 kb on - strandat 715.940 kb on - strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.974 kb on - strandat 716.003 kb on + strandat 716.003 kb on + strandat 716.035 kb on + strandat 716.036 kb on - strandat 716.102 kb on + strandat 716.102 kb on + strandat 716.102 kb on + strandat 716.103 kb on - strandat 716.120 kb on - strandat 716.269 kb on + strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.296 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.378 kb on - strand, within Psyr_0627at 716.611 kb on - strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.895 kb on - strandat 716.955 kb on + strandat 716.955 kb on + strandat 716.955 kb on + strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.956 kb on - strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.984 kb on + strandat 716.985 kb on - strandat 716.985 kb on - strandat 716.985 kb on - strandat 716.985 kb on - strandat 716.985 kb on - strandat 717.127 kb on - strand, within Psyr_0628at 717.127 kb on - strand, within Psyr_0628at 717.156 kb on + strand, within Psyr_0628at 717.157 kb on - strand, within Psyr_0628at 717.157 kb on - strand, within Psyr_0628at 717.273 kb on + strand, within Psyr_0628at 717.273 kb on + strand, within Psyr_0628at 717.273 kb on + strand, within Psyr_0628at 717.274 kb on - strand, within Psyr_0628at 717.360 kb on + strand, within Psyr_0628at 717.360 kb on + strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.361 kb on - strand, within Psyr_0628at 717.366 kb on + strand, within Psyr_0628at 717.432 kb on + strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.513 kb on + strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.514 kb on - strand, within Psyr_0628at 717.565 kb on - strand, within Psyr_0628at 717.565 kb on - strand, within Psyr_0628at 717.565 kb on - strand, within Psyr_0628at 717.698 kb on + strand, within Psyr_0628at 717.699 kb on - strand, within Psyr_0628at 717.723 kb on + strand, within Psyr_0628

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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715,160 + -0.8
715,160 + -1.2
715,161 - +1.2
715,161 - +0.3
715,269 - +0.4
715,527 + Psyr_0626 0.46 -1.7
715,528 - Psyr_0626 0.46 -1.2
715,620 + Psyr_0626 0.60 +0.5
715,620 + Psyr_0626 0.60 -1.3
715,620 + Psyr_0626 0.60 -0.4
715,620 + Psyr_0626 0.60 +0.2
715,620 + Psyr_0626 0.60 +2.4
715,620 + Psyr_0626 0.60 +1.0
715,620 + Psyr_0626 0.60 +0.3
715,621 - Psyr_0626 0.60 -1.5
715,621 - Psyr_0626 0.60 +2.6
715,621 - Psyr_0626 0.60 +2.7
715,621 - Psyr_0626 0.60 +0.1
715,621 - Psyr_0626 0.60 -1.5
715,794 + Psyr_0626 0.87 -2.1
715,795 - Psyr_0626 0.87 -0.5
715,795 - Psyr_0626 0.87 -0.7
715,804 + Psyr_0626 0.89 -0.7
715,804 + Psyr_0626 0.89 +0.0
715,804 + Psyr_0626 0.89 -1.7
715,805 - Psyr_0626 0.89 -1.5
715,805 - Psyr_0626 0.89 +1.0
715,805 - Psyr_0626 0.89 -2.3
715,805 - Psyr_0626 0.89 -3.7
715,809 + Psyr_0626 0.90 -1.5
715,809 + Psyr_0626 0.90 +1.6
715,810 - Psyr_0626 0.90 -0.4
715,810 - Psyr_0626 0.90 -0.7
715,810 - Psyr_0626 0.90 -4.3
715,834 - -0.2
715,852 + +3.9
715,852 + +0.7
715,852 + -1.7
715,940 - -1.7
715,940 - -1.7
715,941 + +0.2
715,941 + -0.5
715,941 + -1.5
715,941 + +2.8
715,941 + -1.5
715,941 + -0.0
715,941 + -1.0
715,941 + -4.5
715,941 + -0.1
715,941 + +1.1
715,941 + +0.2
715,941 + +1.4
715,941 + +0.3
715,942 - +2.7
715,942 - -3.0
715,942 - -0.4
715,942 - -1.6
715,942 - +0.6
715,942 - -0.9
715,942 - +0.4
715,974 - +1.4
716,003 + -4.4
716,003 + +0.4
716,035 + +0.1
716,036 - -0.8
716,102 + +1.1
716,102 + -1.2
716,102 + -0.7
716,103 - -0.3
716,120 - -1.1
716,269 + Psyr_0627 0.18 -1.8
716,270 - Psyr_0627 0.18 +0.5
716,270 - Psyr_0627 0.18 -1.4
716,270 - Psyr_0627 0.18 +0.3
716,296 + Psyr_0627 0.21 -0.6
716,327 + Psyr_0627 0.25 -4.0
716,327 + Psyr_0627 0.25 -1.3
716,327 + Psyr_0627 0.25 +0.5
716,328 - Psyr_0627 0.25 +0.5
716,328 - Psyr_0627 0.25 +1.6
716,328 - Psyr_0627 0.25 -2.3
716,328 - Psyr_0627 0.25 +0.3
716,328 - Psyr_0627 0.25 +1.3
716,369 - Psyr_0627 0.30 -2.6
716,369 - Psyr_0627 0.30 -1.3
716,377 + Psyr_0627 0.31 -2.0
716,377 + Psyr_0627 0.31 -3.4
716,378 - Psyr_0627 0.31 +1.7
716,611 - Psyr_0627 0.58 +0.6
716,710 + Psyr_0627 0.70 -1.8
716,711 - Psyr_0627 0.70 -0.9
716,711 - Psyr_0627 0.70 -2.3
716,895 - -2.0
716,955 + -0.4
716,955 + -1.3
716,955 + +0.2
716,956 - +0.2
716,956 - -1.3
716,956 - -1.7
716,956 - +2.2
716,984 + +0.2
716,984 + -0.4
716,984 + +1.4
716,984 + -1.8
716,985 - -0.9
716,985 - +0.9
716,985 - -1.5
716,985 - -0.3
716,985 - +4.8
717,127 - Psyr_0628 0.11 -3.3
717,127 - Psyr_0628 0.11 +4.8
717,156 + Psyr_0628 0.13 +0.8
717,157 - Psyr_0628 0.13 -0.9
717,157 - Psyr_0628 0.13 +1.1
717,273 + Psyr_0628 0.21 +0.9
717,273 + Psyr_0628 0.21 -2.5
717,273 + Psyr_0628 0.21 -1.2
717,274 - Psyr_0628 0.21 -0.2
717,360 + Psyr_0628 0.27 +1.3
717,360 + Psyr_0628 0.27 -0.4
717,361 - Psyr_0628 0.27 +0.6
717,361 - Psyr_0628 0.27 +0.8
717,361 - Psyr_0628 0.27 -0.2
717,361 - Psyr_0628 0.27 -2.8
717,361 - Psyr_0628 0.27 -2.5
717,366 + Psyr_0628 0.28 +1.2
717,432 + Psyr_0628 0.33 +1.7
717,513 + Psyr_0628 0.38 +0.6
717,513 + Psyr_0628 0.38 -0.8
717,513 + Psyr_0628 0.38 +1.0
717,514 - Psyr_0628 0.38 -0.5
717,514 - Psyr_0628 0.38 -1.3
717,514 - Psyr_0628 0.38 +1.7
717,514 - Psyr_0628 0.38 +0.3
717,514 - Psyr_0628 0.38 +3.3
717,565 - Psyr_0628 0.42 -1.4
717,565 - Psyr_0628 0.42 -0.3
717,565 - Psyr_0628 0.42 -0.4
717,698 + Psyr_0628 0.52 +2.1
717,699 - Psyr_0628 0.52 -0.6
717,723 + Psyr_0628 0.53 +2.9

Or see this region's nucleotide sequence