Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0451 and Psyr_0452 are separated by 122 nucleotides Psyr_0452 and Psyr_0453 are separated by 106 nucleotides Psyr_0453 and Psyr_0454 are separated by 131 nucleotides
Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853
_0451
Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590
_0452
Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416
_0453
Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954
_0454
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.087 kb on + strand, within Psyr_0451 at 487.210 kb on - strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.435 kb on + strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.436 kb on - strand, within Psyr_0451 at 487.472 kb on + strand, within Psyr_0451 at 487.541 kb on - strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.651 kb on + strand, within Psyr_0451 at 487.652 kb on - strand, within Psyr_0451 at 487.652 kb on - strand, within Psyr_0451 at 487.813 kb on - strand at 487.894 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.947 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.983 kb on - strand at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.132 kb on + strand, within Psyr_0452 at 488.133 kb on - strand, within Psyr_0452 at 488.150 kb on + strand, within Psyr_0452 at 488.151 kb on - strand, within Psyr_0452 at 488.210 kb on + strand, within Psyr_0452 at 488.210 kb on + strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.329 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.579 kb on + strand at 488.579 kb on + strand at 488.580 kb on - strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.622 kb on + strand at 488.623 kb on - strand at 488.623 kb on - strand at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 487,087 + Psyr_0451 0.17 +4.5 487,210 - Psyr_0451 0.31 +1.0 487,435 + Psyr_0451 0.55 +3.5 487,435 + Psyr_0451 0.55 +0.6 487,435 + Psyr_0451 0.55 +1.3 487,435 + Psyr_0451 0.55 +1.4 487,435 + Psyr_0451 0.55 +1.0 487,436 - Psyr_0451 0.55 -0.0 487,436 - Psyr_0451 0.55 +0.4 487,436 - Psyr_0451 0.55 +2.3 487,436 - Psyr_0451 0.55 +3.1 487,436 - Psyr_0451 0.55 +0.7 487,472 + Psyr_0451 0.59 -2.4 487,541 - Psyr_0451 0.66 -0.5 487,651 + Psyr_0451 0.78 -0.6 487,651 + Psyr_0451 0.78 +1.3 487,651 + Psyr_0451 0.78 +1.2 487,651 + Psyr_0451 0.78 +0.7 487,652 - Psyr_0451 0.78 -1.6 487,652 - Psyr_0451 0.78 +1.6 487,813 - -2.6 487,894 + -0.7 487,904 + +0.8 487,904 + -2.9 487,904 + +1.7 487,904 + +0.1 487,904 + +0.7 487,905 - -2.8 487,905 - +1.2 487,905 - +1.7 487,905 - -0.3 487,905 - +0.2 487,905 - -0.8 487,905 - +0.9 487,905 - -0.0 487,905 - -0.6 487,905 - +0.1 487,905 - +1.2 487,947 + -2.3 487,979 + -1.9 487,979 + +0.2 487,979 + -0.9 487,979 + -1.9 487,979 + -0.9 487,980 - -3.7 487,980 - -0.3 487,980 - -2.2 487,980 - -0.9 487,980 - -0.7 487,983 - +0.1 488,108 + Psyr_0452 0.21 -1.6 488,108 + Psyr_0452 0.21 +0.1 488,108 + Psyr_0452 0.21 +1.3 488,108 + Psyr_0452 0.21 +0.2 488,108 + Psyr_0452 0.21 -0.1 488,108 + Psyr_0452 0.21 -0.6 488,108 + Psyr_0452 0.21 -0.6 488,108 + Psyr_0452 0.21 -1.1 488,108 + Psyr_0452 0.21 +0.5 488,108 + Psyr_0452 0.21 -3.5 488,108 + Psyr_0452 0.21 -2.8 488,108 + Psyr_0452 0.21 -2.2 488,108 + Psyr_0452 0.21 -0.2 488,108 + Psyr_0452 0.21 +1.1 488,108 + Psyr_0452 0.21 -0.1 488,109 - Psyr_0452 0.22 +0.1 488,109 - Psyr_0452 0.22 +0.1 488,109 - Psyr_0452 0.22 -0.6 488,109 - Psyr_0452 0.22 +1.4 488,109 - Psyr_0452 0.22 +1.1 488,109 - Psyr_0452 0.22 -0.1 488,109 - Psyr_0452 0.22 -2.0 488,109 - Psyr_0452 0.22 -1.3 488,109 - Psyr_0452 0.22 -2.6 488,109 - Psyr_0452 0.22 -3.5 488,109 - Psyr_0452 0.22 -1.0 488,109 - Psyr_0452 0.22 +1.3 488,109 - Psyr_0452 0.22 -2.0 488,132 + Psyr_0452 0.25 -1.6 488,133 - Psyr_0452 0.26 +0.2 488,150 + Psyr_0452 0.28 -1.1 488,151 - Psyr_0452 0.28 -0.2 488,210 + Psyr_0452 0.38 -0.4 488,210 + Psyr_0452 0.38 -1.6 488,211 - Psyr_0452 0.38 +0.1 488,211 - Psyr_0452 0.38 +0.3 488,232 - Psyr_0452 0.42 -0.3 488,232 - Psyr_0452 0.42 -2.3 488,328 + Psyr_0452 0.57 +0.1 488,328 + Psyr_0452 0.57 -3.4 488,328 + Psyr_0452 0.57 -0.7 488,329 - Psyr_0452 0.57 -3.5 488,469 - Psyr_0452 0.80 +0.8 488,469 - Psyr_0452 0.80 +0.5 488,469 - Psyr_0452 0.80 +0.6 488,579 + +0.4 488,579 + -0.9 488,580 - -0.6 488,622 + -2.6 488,622 + +2.0 488,622 + -0.6 488,622 + -1.2 488,622 + +0.6 488,623 - -1.3 488,623 - -2.2 489,340 + Psyr_0453 0.89 +0.7 489,340 + Psyr_0453 0.89 +1.0 489,340 + Psyr_0453 0.89 +1.6 489,340 + Psyr_0453 0.89 +2.4 489,340 + Psyr_0453 0.89 -1.5 489,340 + Psyr_0453 0.89 +1.6 489,340 + Psyr_0453 0.89 -0.9 489,340 + Psyr_0453 0.89 -0.6 489,340 + Psyr_0453 0.89 +2.3 489,341 - Psyr_0453 0.89 +0.4 489,341 - Psyr_0453 0.89 -0.6 489,341 - Psyr_0453 0.89 +0.2
Or see this region's nucleotide sequence