Strain Fitness in Pseudomonas putida KT2440 around PP_5067

Experiment: limonene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	limonene 10 vol%
5,781,185	-		PP_5066	0.83	-1.8
5,781,185	-		PP_5066	0.83	-0.2
5,781,285	-		PP_5066	0.89	-0.2
5,781,363	+				-1.4
5,781,366	+				+0.1
5,781,489	-				+0.4
5,781,516	+				-0.8
5,781,517	-				-0.4
5,781,525	+				-0.6
5,781,526	-				+1.3
5,781,526	-				-0.4
5,781,526	-				+1.1
5,781,526	-				+0.4
5,781,541	+				+0.3
5,781,542	-				-0.3
5,782,372	+		PP_5067	0.26	-0.7
5,782,372	+		PP_5067	0.26	-0.1
5,782,398	+		PP_5067	0.26	-0.7
5,782,522	+		PP_5067	0.30	-0.5
5,782,522	+		PP_5067	0.30	+0.3
5,782,523	-		PP_5067	0.30	-0.1
5,782,524	+		PP_5067	0.30	-0.8
5,782,524	+		PP_5067	0.30	+0.2
5,782,597	+		PP_5067	0.32	+0.2
5,782,597	+		PP_5067	0.32	+0.8
5,782,598	-		PP_5067	0.32	+0.5
5,782,598	-		PP_5067	0.32	-0.2
5,782,649	-		PP_5067	0.34	+0.4
5,782,649	-		PP_5067	0.34	-1.1
5,782,909	+		PP_5067	0.42	+1.0
5,782,909	+		PP_5067	0.42	+1.0
5,782,909	+		PP_5067	0.42	+0.5
5,782,909	+		PP_5067	0.42	-0.2
5,782,909	+		PP_5067	0.42	-0.1
5,782,910	-		PP_5067	0.42	-0.8
5,782,910	-		PP_5067	0.42	+0.6
5,782,910	-		PP_5067	0.42	-0.0
5,782,910	-		PP_5067	0.42	-0.4
5,782,910	-		PP_5067	0.42	+0.6
5,783,054	-		PP_5067	0.46	+0.1
5,783,054	-		PP_5067	0.46	-0.7
5,783,060	-		PP_5067	0.46	+0.6
5,783,191	+		PP_5067	0.50	-0.1
5,783,191	+		PP_5067	0.50	+0.4
5,783,192	-		PP_5067	0.50	-0.8
5,783,275	+		PP_5067	0.53	-0.7
5,783,276	-		PP_5067	0.53	+0.8
5,783,276	-		PP_5067	0.53	-0.7
5,783,276	-		PP_5067	0.53	+0.2
5,783,290	-		PP_5067	0.53	-1.8
5,783,479	+		PP_5067	0.59	+0.4
5,783,620	+		PP_5067	0.63	-1.3
5,783,620	+		PP_5067	0.63	-0.3
5,783,621	-		PP_5067	0.63	+1.0
5,783,621	-		PP_5067	0.63	+0.0
5,783,621	-		PP_5067	0.63	-0.3
5,783,621	-		PP_5067	0.63	+0.1
5,783,623	+		PP_5067	0.63	-0.2
5,783,624	-		PP_5067	0.63	-0.4
5,783,624	-		PP_5067	0.63	-0.7
5,783,624	-		PP_5067	0.63	-0.5
5,783,624	-		PP_5067	0.63	-1.2
5,783,624	-		PP_5067	0.63	+0.8
5,783,656	+		PP_5067	0.64	+0.6
5,783,656	+		PP_5067	0.64	-0.5
5,783,656	+		PP_5067	0.64	+0.3
5,783,656	+		PP_5067	0.64	-0.9
5,783,657	-		PP_5067	0.64	+0.4
5,783,665	+		PP_5067	0.65	-0.2
5,783,740	+		PP_5067	0.67	+0.2
5,783,930	-		PP_5067	0.73	+1.5
5,783,950	+		PP_5067	0.73	+0.2
5,783,957	-		PP_5067	0.73	+0.9
5,784,080	+		PP_5067	0.77	+0.7
5,784,081	-		PP_5067	0.77	-0.4
5,784,145	+		PP_5067	0.79	-0.6
5,784,146	-		PP_5067	0.79	-0.2
5,784,146	-		PP_5067	0.79	+0.6
5,784,505	+				-0.5
5,784,595	+				-0.9
5,784,595	+				+0.5
5,784,596	-				-0.8
5,784,694	+				-0.9
5,784,694	+				-0.8
5,784,721	-				+0.9
5,784,721	-				+0.3
5,784,847	-				-1.1
5,784,851	+				+0.1
5,784,852	-				+0.0
5,784,852	-				+0.5
5,784,852	-				+0.2
5,784,852	-				+0.5
5,784,852	-				+0.4
5,784,852	-				-0.6
5,785,225	+		PP_5068	0.16	-0.7
5,785,226	-		PP_5068	0.16	+1.6
5,785,250	-		PP_5068	0.17	-0.2
5,785,354	+		PP_5068	0.24	+0.9
5,785,354	+		PP_5068	0.24	+0.6
5,785,355	-		PP_5068	0.25	+0.6
5,785,463	+		PP_5068	0.32	+0.7
5,785,561	+		PP_5068	0.39	-1.3
5,785,562	-		PP_5068	0.39	-0.1
5,785,567	+		PP_5068	0.39	+0.4
5,785,567	+		PP_5068	0.39	+0.0
5,785,568	-		PP_5068	0.39	+1.3
5,785,568	-		PP_5068	0.39	-1.0
5,785,571	-		PP_5068	0.39	+0.3
5,785,571	-		PP_5068	0.39	+0.4
5,785,571	-		PP_5068	0.39	+0.1
5,785,627	+		PP_5068	0.43	+0.1
5,785,720	+		PP_5068	0.49	-0.4
5,785,720	+		PP_5068	0.49	-0.1
5,785,721	-		PP_5068	0.50	+0.4
5,785,721	-		PP_5068	0.50	-1.1
5,785,721	-		PP_5068	0.50	+0.5
5,785,721	-		PP_5068	0.50	+0.4
5,785,793	-		PP_5068	0.54	+0.3
5,785,793	-		PP_5068	0.54	-0.4