Strain Fitness in Pseudomonas putida KT2440 around PP_0017

Experiment: limonene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	limonene 10 vol%
21,241	+		PP_0016	0.54	+0.3
21,241	+		PP_0016	0.54	-1.3
21,241	+		PP_0016	0.54	-0.7
21,241	+		PP_0016	0.54	-0.7
21,242	-		PP_0016	0.54	+0.1
21,242	-		PP_0016	0.54	-0.1
21,324	+		PP_0016	0.59	+0.1
21,325	-		PP_0016	0.59	+0.7
21,325	-		PP_0016	0.59	-1.0
21,357	+		PP_0016	0.60	-0.7
21,357	+		PP_0016	0.60	+0.7
21,357	+		PP_0016	0.60	+0.7
21,358	-		PP_0016	0.61	-0.3
21,358	-		PP_0016	0.61	-0.3
21,368	-		PP_0016	0.61	-0.0
21,460	+		PP_0016	0.66	+1.5
21,495	-		PP_0016	0.68	+0.1
21,495	-		PP_0016	0.68	+0.2
21,495	-		PP_0016	0.68	+0.1
21,497	-		PP_0016	0.68	+0.3
21,552	+		PP_0016	0.71	+0.2
21,552	+		PP_0016	0.71	-0.2
21,552	+		PP_0016	0.71	-0.0
21,553	-		PP_0016	0.71	+0.0
21,553	-		PP_0016	0.71	-0.0
21,553	-		PP_0016	0.71	+0.3
21,553	-		PP_0016	0.71	-0.3
21,553	-		PP_0016	0.71	+0.2
21,553	-		PP_0016	0.71	+0.1
21,575	+		PP_0016	0.72	-0.3
21,575	+		PP_0016	0.72	-0.2
21,618	+		PP_0016	0.74	-0.0
21,619	-		PP_0016	0.74	+0.4
21,717	+		PP_0016	0.79	-0.1
21,718	-		PP_0016	0.79	-0.2
21,718	-		PP_0016	0.79	-0.9
21,718	-		PP_0016	0.79	+0.6
21,740	+		PP_0016	0.80	-0.0
21,740	+		PP_0016	0.80	-0.3
21,765	+		PP_0016	0.82	-0.4
21,766	-		PP_0016	0.82	+0.6
21,811	+		PP_0016	0.84	-0.4
21,811	+		PP_0016	0.84	-0.5
21,812	-		PP_0016	0.84	-0.1
21,812	-		PP_0016	0.84	+0.0
21,845	+		PP_0016	0.86	-1.3
21,845	+		PP_0016	0.86	+0.2
21,845	+		PP_0016	0.86	+0.4
21,845	+		PP_0016	0.86	+1.3
21,845	+		PP_0016	0.86	+0.3
21,845	+		PP_0016	0.86	+0.0
21,846	-		PP_0016	0.86	-0.7
21,846	-		PP_0016	0.86	-1.0
21,846	-		PP_0016	0.86	-0.5
21,846	-		PP_0016	0.86	+0.3
21,847	+		PP_0016	0.86	+0.8
21,847	+		PP_0016	0.86	+0.2
21,848	-		PP_0016	0.86	-0.2
21,872	+		PP_0016	0.87	+0.7
21,872	+		PP_0016	0.87	-1.5
21,972	-				+0.7
21,972	-				-0.2
22,005	-				-1.5
22,112	+				+0.1
22,117	-				-1.8
22,117	-				-0.2
22,140	+				+0.3
22,170	+				-0.5
22,170	+				-1.0
22,170	+				+0.1
22,170	+				-0.2
22,171	-				-0.7
22,171	-				+0.4
22,171	-				-0.2
22,171	-				+0.3
22,171	-				-0.7
22,171	-				-0.2
22,309	+		PP_0017	0.38	+0.4
22,309	+		PP_0017	0.38	+0.2
22,371	+		PP_0017	0.56	+2.8
22,371	+		PP_0017	0.56	-0.3
22,406	+		PP_0017	0.65	-0.2
22,406	+		PP_0017	0.65	+0.1
22,407	-		PP_0017	0.66	-0.5
22,407	-		PP_0017	0.66	-0.4
22,415	-		PP_0017	0.68	+0.1
22,415	-		PP_0017	0.68	-0.1
22,459	-		PP_0017	0.80	+0.3
22,467	+		PP_0017	0.82	-0.8
22,467	+		PP_0017	0.82	-0.1
22,467	+		PP_0017	0.82	+0.4
22,474	-		PP_0017	0.84	-0.8
22,492	+		PP_0017	0.89	+0.0
22,493	-		PP_0017	0.89	+0.4
22,505	+				-0.1
22,506	-				+0.2
22,640	+				-0.8
22,649	+				-0.6
22,650	-				-0.1
22,650	-				-1.0
22,653	+				-1.1
22,654	-				-0.9
22,839	+				-0.0
22,839	+				-0.3
22,840	-				-0.0
22,840	-				-1.2
22,840	-				+0.3
22,840	-				+0.2
22,913	-				+0.2
22,948	+				-0.7
22,948	+				+0.2
22,990	+				-1.4
22,991	-				+0.3
23,005	+				+0.2
23,029	+				-0.4
23,029	+				-0.3
23,030	-				+1.3
23,030	-				-0.4
23,101	+				+1.0
23,101	+				+0.2
23,103	+				-0.8
23,103	+				-0.2
23,103	+				+0.3
23,103	+				-2.1
23,103	+				+0.3
23,103	+				-0.2