Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4986

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,910,327	+		Psyr_4984	0.29	-2.7
5,910,372	+		Psyr_4984	0.37	+0.1
5,910,373	-		Psyr_4984	0.37	-2.9
5,910,383	-		Psyr_4984	0.39	+0.2
5,910,383	-		Psyr_4984	0.39	+0.7
5,910,383	-		Psyr_4984	0.39	+1.1
5,910,425	+		Psyr_4984	0.46	-0.9
5,910,425	+		Psyr_4984	0.46	-0.5
5,910,425	+		Psyr_4984	0.46	+0.5
5,910,425	+		Psyr_4984	0.46	+0.4
5,910,425	+		Psyr_4984	0.46	+0.4
5,910,426	-		Psyr_4984	0.46	-0.7
5,910,426	-		Psyr_4984	0.46	-0.3
5,910,426	-		Psyr_4984	0.46	+1.4
5,910,426	-		Psyr_4984	0.46	+2.1
5,910,426	-		Psyr_4984	0.46	+1.9
5,910,426	-		Psyr_4984	0.46	+1.2
5,910,426	-		Psyr_4984	0.46	+1.1
5,910,426	-		Psyr_4984	0.46	+1.7
5,910,502	-		Psyr_4984	0.59	+1.4
5,910,502	-		Psyr_4984	0.59	+0.4
5,910,502	-		Psyr_4984	0.59	+1.1
5,910,538	-		Psyr_4984	0.65	+0.0
5,910,600	-		Psyr_4984	0.76	+0.8
5,910,600	-		Psyr_4984	0.76	+0.2
5,910,779	+				-2.2
5,910,779	+				+0.3
5,910,880	+		Psyr_4985	0.23	+2.9
5,910,880	+		Psyr_4985	0.23	+1.7
5,910,880	+		Psyr_4985	0.23	+0.7
5,910,880	+		Psyr_4985	0.23	+1.5
5,910,881	-		Psyr_4985	0.23	-0.5
5,910,881	-		Psyr_4985	0.23	+2.9
5,910,881	-		Psyr_4985	0.23	+0.3
5,910,903	+		Psyr_4985	0.28	-0.3
5,910,926	+		Psyr_4985	0.33	+1.9
5,910,926	+		Psyr_4985	0.33	-0.5
5,910,926	+		Psyr_4985	0.33	+2.7
5,910,927	-		Psyr_4985	0.33	+0.5
5,910,927	-		Psyr_4985	0.33	+1.3
5,910,927	-		Psyr_4985	0.33	+3.1
5,910,927	-		Psyr_4985	0.33	+1.4
5,910,927	-		Psyr_4985	0.33	-1.0
5,910,927	-		Psyr_4985	0.33	+0.4
5,910,927	-		Psyr_4985	0.33	+1.0
5,910,927	-		Psyr_4985	0.33	-0.3
5,910,927	-		Psyr_4985	0.33	+1.7
5,911,043	+		Psyr_4985	0.58	-0.6
5,911,046	+		Psyr_4985	0.58	-1.8
5,911,046	+		Psyr_4985	0.58	-1.3
5,911,046	+		Psyr_4985	0.58	+3.7
5,911,046	+		Psyr_4985	0.58	+1.7
5,911,046	+		Psyr_4985	0.58	-3.1
5,911,046	+		Psyr_4985	0.58	-0.1
5,911,046	+		Psyr_4985	0.58	+1.9
5,911,046	+		Psyr_4985	0.58	-0.0
5,911,046	+		Psyr_4985	0.58	-0.5
5,911,046	+		Psyr_4985	0.58	+0.5
5,911,046	+		Psyr_4985	0.58	+2.0
5,911,046	+		Psyr_4985	0.58	-3.0
5,911,046	+		Psyr_4985	0.58	-0.4
5,911,046	+		Psyr_4985	0.58	+4.2
5,911,047	-		Psyr_4985	0.59	-2.9
5,911,047	-		Psyr_4985	0.59	-0.5
5,911,047	-		Psyr_4985	0.59	+0.5
5,911,047	-		Psyr_4985	0.59	-2.7
5,911,047	-		Psyr_4985	0.59	-2.1
5,911,047	-		Psyr_4985	0.59	-0.0
5,911,047	-		Psyr_4985	0.59	-0.5
5,911,047	-		Psyr_4985	0.59	+1.1
5,911,047	-		Psyr_4985	0.59	+1.6
5,911,047	-		Psyr_4985	0.59	-0.1
5,911,047	-		Psyr_4985	0.59	-2.5
5,911,047	-		Psyr_4985	0.59	-1.9
5,911,047	-		Psyr_4985	0.59	+1.3
5,911,047	-		Psyr_4985	0.59	-0.6
5,911,047	-		Psyr_4985	0.59	-1.1
5,911,067	+		Psyr_4985	0.63	+1.5
5,911,067	+		Psyr_4985	0.63	-0.9
5,911,067	+		Psyr_4985	0.63	-0.4
5,911,067	+		Psyr_4985	0.63	-0.1
5,911,071	-		Psyr_4985	0.64	+0.3
5,911,238	+				-1.6
5,911,238	+				-1.6
5,911,416	+				-1.1
5,911,452	+				+0.1
5,911,452	+				-0.7
5,911,452	+				+2.0
5,911,452	+				+1.0
5,911,452	+				+2.2
5,911,453	-				-2.3
5,911,453	-				+0.9
5,911,453	-				+0.7
5,911,453	-				+0.1
5,911,453	-				-2.2
5,911,453	-				-0.4
5,911,453	-				+0.8
5,911,501	+				+1.3
5,911,501	+				-0.2
5,911,501	+				+1.4
5,911,501	+				-2.2
5,911,501	+				+1.9
5,911,501	+				+2.4
5,911,501	+				+2.7
5,911,501	+				-0.8
5,911,501	+				-0.1
5,911,501	+				+1.2
5,911,502	-				+2.4
5,911,502	-				+0.5
5,911,502	-				-1.6
5,911,502	-				-0.7
5,911,502	-				+1.4
5,911,502	-				+0.9
5,911,502	-				+0.4
5,911,502	-				-2.4
5,911,502	-				+0.4
5,911,502	-				+2.9
5,911,502	-				-0.5
5,911,502	-				+2.1
5,911,502	-				+1.7
5,911,502	-				+0.9
5,911,502	-				+0.9
5,911,679	+		Psyr_4986	0.10	+0.3
5,911,679	+		Psyr_4986	0.10	+1.9
5,911,679	+		Psyr_4986	0.10	+0.1
5,911,679	+		Psyr_4986	0.10	+1.9
5,911,679	+		Psyr_4986	0.10	+1.4
5,911,679	+		Psyr_4986	0.10	+1.7
5,911,679	+		Psyr_4986	0.10	+1.3
5,911,679	+		Psyr_4986	0.10	+1.9
5,911,679	+		Psyr_4986	0.10	+1.0
5,911,679	+		Psyr_4986	0.10	+1.3
5,911,679	+		Psyr_4986	0.10	-1.5
5,911,680	-		Psyr_4986	0.10	+1.2
5,911,680	-		Psyr_4986	0.10	-0.7
5,911,680	-		Psyr_4986	0.10	+1.2
5,911,680	-		Psyr_4986	0.10	+0.6
5,911,680	-		Psyr_4986	0.10	+0.9
5,911,680	-		Psyr_4986	0.10	+1.5
5,911,680	-		Psyr_4986	0.10	+0.2
5,911,680	-		Psyr_4986	0.10	+0.5
5,911,706	-		Psyr_4986	0.11	-1.1
5,911,911	-		Psyr_4986	0.16	+1.5
5,912,036	-		Psyr_4986	0.19	-2.2
5,912,063	+		Psyr_4986	0.19	-0.5
5,912,064	-		Psyr_4986	0.19	+1.8
5,912,126	-		Psyr_4986	0.21	-1.1
5,912,126	-		Psyr_4986	0.21	+0.8
5,912,126	-		Psyr_4986	0.21	+0.9
5,912,130	+		Psyr_4986	0.21	+1.1
5,912,168	+		Psyr_4986	0.22	+0.2
5,912,168	+		Psyr_4986	0.22	-0.0
5,912,168	+		Psyr_4986	0.22	+2.0
5,912,168	+		Psyr_4986	0.22	+2.3
5,912,168	+		Psyr_4986	0.22	+4.2
5,912,168	+		Psyr_4986	0.22	+1.5
5,912,168	+		Psyr_4986	0.22	-0.4
5,912,169	-		Psyr_4986	0.22	-0.1
5,912,188	+		Psyr_4986	0.22	+1.2
5,912,188	+		Psyr_4986	0.22	+0.9
5,912,188	+		Psyr_4986	0.22	+1.5
5,912,188	+		Psyr_4986	0.22	-0.0
5,912,188	+		Psyr_4986	0.22	+0.7
5,912,188	+		Psyr_4986	0.22	-1.3
5,912,188	+		Psyr_4986	0.22	-0.4
5,912,188	+		Psyr_4986	0.22	+0.1
5,912,188	+		Psyr_4986	0.22	-0.6
5,912,188	+		Psyr_4986	0.22	-2.1
5,912,188	+		Psyr_4986	0.22	-1.5
5,912,189	-		Psyr_4986	0.22	-0.5
5,912,189	-		Psyr_4986	0.22	+1.7
5,912,189	-		Psyr_4986	0.22	-1.8
5,912,189	-		Psyr_4986	0.22	+0.2
5,912,189	-		Psyr_4986	0.22	-1.1
5,912,189	-		Psyr_4986	0.22	+1.1
5,912,189	-		Psyr_4986	0.22	+1.7
5,912,189	-		Psyr_4986	0.22	+0.2
5,912,189	-		Psyr_4986	0.22	-0.0
5,912,209	+		Psyr_4986	0.23	+0.1
5,912,209	+		Psyr_4986	0.23	+1.9
5,912,209	+		Psyr_4986	0.23	+0.1
5,912,210	-		Psyr_4986	0.23	-0.0
5,912,236	+		Psyr_4986	0.23	-2.5
5,912,269	+		Psyr_4986	0.24	+2.1
5,912,270	-		Psyr_4986	0.24	+3.2
5,912,270	-		Psyr_4986	0.24	+1.1
5,912,270	-		Psyr_4986	0.24	-0.7
5,912,270	-		Psyr_4986	0.24	+1.1
5,912,270	-		Psyr_4986	0.24	-0.3
5,912,416	+		Psyr_4986	0.28	+1.0
5,912,417	-		Psyr_4986	0.28	+1.2
5,912,497	+		Psyr_4986	0.30	-1.5
5,912,505	+		Psyr_4986	0.30	+1.6
5,912,549	+		Psyr_4986	0.31	+1.2
5,912,563	+		Psyr_4986	0.31	+0.3
5,912,564	-		Psyr_4986	0.31	+0.6
5,912,564	-		Psyr_4986	0.31	+0.4
5,912,732	+		Psyr_4986	0.35	+1.2
5,912,732	+		Psyr_4986	0.35	+0.3
5,912,732	+		Psyr_4986	0.35	+1.0
5,912,733	-		Psyr_4986	0.35	+0.7
5,912,758	+		Psyr_4986	0.36	+1.9
5,912,759	-		Psyr_4986	0.36	+1.6
5,912,794	+		Psyr_4986	0.37	-1.1
5,912,795	-		Psyr_4986	0.37	-0.9
5,912,795	-		Psyr_4986	0.37	+0.3
5,912,795	-		Psyr_4986	0.37	+0.9
5,912,809	+		Psyr_4986	0.37	+0.9
5,912,809	+		Psyr_4986	0.37	+1.4
5,912,809	+		Psyr_4986	0.37	+3.6
5,912,809	+		Psyr_4986	0.37	+0.2
5,912,810	-		Psyr_4986	0.37	-0.1
5,912,810	-		Psyr_4986	0.37	+1.2
5,912,810	-		Psyr_4986	0.37	+1.1
5,912,810	-		Psyr_4986	0.37	+0.1
5,912,810	-		Psyr_4986	0.37	-0.1
5,912,810	-		Psyr_4986	0.37	-1.3
5,912,810	-		Psyr_4986	0.37	-0.6
5,912,934	+		Psyr_4986	0.40	-0.0
5,912,934	+		Psyr_4986	0.40	+0.8
5,913,013	+		Psyr_4986	0.42	+0.4
5,913,013	+		Psyr_4986	0.42	+2.1
5,913,013	+		Psyr_4986	0.42	-0.5
5,913,013	+		Psyr_4986	0.42	+0.0
5,913,013	+		Psyr_4986	0.42	-0.0
5,913,013	+		Psyr_4986	0.42	+1.0
5,913,014	-		Psyr_4986	0.42	-2.8
5,913,014	-		Psyr_4986	0.42	-1.0
5,913,014	-		Psyr_4986	0.42	+0.9
5,913,014	-		Psyr_4986	0.42	-1.5
5,913,014	-		Psyr_4986	0.42	-0.6
5,913,014	-		Psyr_4986	0.42	-1.3
5,913,014	-		Psyr_4986	0.42	-0.7
5,913,014	-		Psyr_4986	0.42	-2.3
5,913,014	-		Psyr_4986	0.42	+1.4
5,913,014	-		Psyr_4986	0.42	+1.9
5,913,071	-		Psyr_4986	0.43	+2.0
5,913,131	-		Psyr_4986	0.45	+1.1
5,913,131	-		Psyr_4986	0.45	+2.0
5,913,194	-		Psyr_4986	0.46	+0.5
5,913,194	-		Psyr_4986	0.46	-2.4
5,913,197	-		Psyr_4986	0.46	+1.9
5,913,222	-		Psyr_4986	0.47	-1.3
5,913,580	+		Psyr_4986	0.55	+0.6
5,913,580	+		Psyr_4986	0.55	-1.9
5,913,874	+		Psyr_4986	0.62	+0.6
5,913,874	+		Psyr_4986	0.62	-3.0
5,913,880	+		Psyr_4986	0.62	-4.1
5,913,880	+		Psyr_4986	0.62	+0.5
5,913,881	-		Psyr_4986	0.62	+0.6
5,913,943	+		Psyr_4986	0.64	+0.6
5,913,943	+		Psyr_4986	0.64	+0.9
5,913,943	+		Psyr_4986	0.64	-0.9
5,913,944	-		Psyr_4986	0.64	+1.4
5,913,944	-		Psyr_4986	0.64	+2.9
5,913,947	-		Psyr_4986	0.64	+2.3
5,914,031	-		Psyr_4986	0.66	-0.2
5,914,031	-		Psyr_4986	0.66	-1.9
5,914,031	-		Psyr_4986	0.66	-1.6
5,914,561	+		Psyr_4986	0.78	-0.1
5,914,561	+		Psyr_4986	0.78	-1.1
5,914,691	-		Psyr_4986	0.81	+0.3
5,914,691	-		Psyr_4986	0.81	+1.6
5,914,691	-		Psyr_4986	0.81	+2.5
5,914,691	-		Psyr_4986	0.81	-2.4
5,914,691	-		Psyr_4986	0.81	-1.9
5,914,691	-		Psyr_4986	0.81	+1.9
5,914,691	-		Psyr_4986	0.81	+0.6
5,914,691	-		Psyr_4986	0.81	-1.1
5,914,691	-		Psyr_4986	0.81	-2.2
5,914,691	-		Psyr_4986	0.81	+1.5
5,914,691	-		Psyr_4986	0.81	+0.8
5,914,691	-		Psyr_4986	0.81	+0.9
5,914,691	-		Psyr_4986	0.81	+1.9
5,914,693	-		Psyr_4986	0.81	-1.6
5,914,693	-		Psyr_4986	0.81	-0.5
5,914,693	-		Psyr_4986	0.81	+0.7
5,914,693	-		Psyr_4986	0.81	+1.7
5,914,693	-		Psyr_4986	0.81	-0.3
5,914,693	-		Psyr_4986	0.81	+1.1
5,914,697	-		Psyr_4986	0.82	+1.1
5,914,697	-		Psyr_4986	0.82	+0.1
5,914,697	-		Psyr_4986	0.82	+0.9
5,914,697	-		Psyr_4986	0.82	+1.2
5,914,942	+		Psyr_4986	0.87	-3.1
5,914,953	+		Psyr_4986	0.88	+0.1
5,914,983	+		Psyr_4986	0.88	-1.8
5,915,018	-		Psyr_4986	0.89	-1.1
5,915,076	+				+0.9
5,915,077	-				+1.8
5,915,090	+				+2.3
5,915,090	+				-2.6
5,915,090	+				+2.3
5,915,090	+				-1.7
5,915,090	+				+2.7
5,915,091	-				+0.8
5,915,138	+				-2.3
5,915,139	-				-3.3
5,915,171	+				+2.3
5,915,171	+				-2.2
5,915,172	-				+0.2
5,915,172	-				-0.3
5,915,172	-				-0.1
5,915,223	+				+2.2
5,915,224	-				+1.6
5,915,224	-				+0.4
5,915,238	-				-2.8
5,915,268	+				+0.6
5,915,268	+				-2.3
5,915,269	-				+0.2
5,915,277	+				+0.6
5,915,309	+				-0.8
5,915,310	-				-1.3
5,915,367	-				-3.3
5,915,451	+				+1.9
5,916,093	-				+1.3
5,916,136	+				-0.1
5,916,136	+				-2.1
5,916,137	-				+0.9
5,916,173	+				-2.8
5,916,200	-				-2.4
5,916,250	+				-2.1
5,916,250	+				+0.4
5,916,250	+				+0.9
5,916,250	+				-0.1
5,916,250	+				-2.2
5,916,250	+				+1.1
5,916,250	+				+1.0
5,916,251	-				-1.0
5,916,251	-				+1.6
5,916,251	-				+0.0
5,916,251	-				-1.6
5,916,251	-				+0.7
5,916,251	-				+2.6
5,916,267	-				+1.3
5,916,267	-				+2.2
5,916,353	-				-2.1
5,916,435	-		Psyr_4988	0.13	+0.5
5,916,449	-		Psyr_4988	0.14	+0.8