Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4742 and Psyr_4743 are separated by 80 nucleotides Psyr_4743 and Psyr_4744 are separated by 147 nucleotides Psyr_4744 and Psyr_4745 are separated by 148 nucleotides Psyr_4745 and Psyr_4746 are separated by 200 nucleotides Psyr_4746 and Psyr_4747 are separated by 9 nucleotides
Psyr_4742: Psyr_4742 - Protein of unknown function DUF423, at 5,620,567 to 5,620,947
_4742
Psyr_4743: Psyr_4743 - Glycosyl transferase, family 51, at 5,621,028 to 5,621,738
_4743
Psyr_4744: Psyr_4744 - hypothetical protein, at 5,621,886 to 5,622,131
_4744
Psyr_4745: Psyr_4745 - hypothetical protein, at 5,622,280 to 5,622,621
_4745
Psyr_4746: Psyr_4746 - hypothetical protein, at 5,622,822 to 5,623,067
_4746
Psyr_4747: Psyr_4747 - hypothetical protein, at 5,623,077 to 5,623,325
_4747
Position (kb) 5621
5622
5623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.992 kb on - strand at 5620.992 kb on - strand at 5621.027 kb on + strand at 5621.027 kb on + strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.039 kb on + strand at 5621.039 kb on + strand at 5621.039 kb on + strand at 5621.040 kb on - strand at 5621.155 kb on + strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.403 kb on + strand, within Psyr_4743 at 5621.403 kb on + strand, within Psyr_4743 at 5621.404 kb on - strand, within Psyr_4743 at 5621.449 kb on + strand, within Psyr_4743 at 5621.449 kb on + strand, within Psyr_4743 at 5621.449 kb on + strand, within Psyr_4743 at 5621.449 kb on + strand, within Psyr_4743 at 5621.449 kb on + strand, within Psyr_4743 at 5621.450 kb on - strand, within Psyr_4743 at 5621.450 kb on - strand, within Psyr_4743 at 5621.450 kb on - strand, within Psyr_4743 at 5621.481 kb on + strand, within Psyr_4743 at 5621.482 kb on - strand, within Psyr_4743 at 5621.482 kb on - strand, within Psyr_4743 at 5621.482 kb on - strand, within Psyr_4743 at 5621.482 kb on - strand, within Psyr_4743 at 5621.482 kb on - strand, within Psyr_4743 at 5621.586 kb on + strand, within Psyr_4743 at 5621.586 kb on + strand, within Psyr_4743 at 5621.587 kb on - strand, within Psyr_4743 at 5621.644 kb on - strand, within Psyr_4743 at 5621.644 kb on - strand, within Psyr_4743 at 5621.644 kb on - strand, within Psyr_4743 at 5621.703 kb on + strand at 5621.704 kb on - strand at 5621.773 kb on + strand at 5621.774 kb on - strand at 5621.774 kb on - strand at 5621.774 kb on - strand at 5621.774 kb on - strand at 5621.802 kb on - strand at 5621.802 kb on - strand at 5621.919 kb on + strand, within Psyr_4744 at 5621.919 kb on + strand, within Psyr_4744 at 5621.919 kb on + strand, within Psyr_4744 at 5622.501 kb on + strand, within Psyr_4745 at 5622.501 kb on + strand, within Psyr_4745 at 5622.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,620,989 + -1.3 5,620,989 + +2.6 5,620,989 + +1.6 5,620,989 + -0.8 5,620,989 + +0.6 5,620,989 + +2.0 5,620,989 + +0.7 5,620,989 + +1.8 5,620,989 + -1.0 5,620,990 - +0.4 5,620,990 - +0.7 5,620,990 - -2.0 5,620,990 - +0.7 5,620,990 - +0.0 5,620,990 - +1.9 5,620,992 - +0.6 5,620,992 - -0.1 5,621,027 + +1.8 5,621,027 + -0.7 5,621,028 - +0.3 5,621,028 - +0.5 5,621,028 - -2.0 5,621,039 + +0.0 5,621,039 + +1.0 5,621,039 + -1.6 5,621,040 - +1.1 5,621,155 + Psyr_4743 0.18 -3.0 5,621,156 - Psyr_4743 0.18 -1.4 5,621,156 - Psyr_4743 0.18 +1.4 5,621,156 - Psyr_4743 0.18 -0.4 5,621,156 - Psyr_4743 0.18 -2.2 5,621,403 + Psyr_4743 0.53 -2.2 5,621,403 + Psyr_4743 0.53 +0.7 5,621,404 - Psyr_4743 0.53 -0.1 5,621,449 + Psyr_4743 0.59 +0.8 5,621,449 + Psyr_4743 0.59 -1.8 5,621,449 + Psyr_4743 0.59 +1.5 5,621,449 + Psyr_4743 0.59 -1.8 5,621,449 + Psyr_4743 0.59 +0.3 5,621,450 - Psyr_4743 0.59 -2.4 5,621,450 - Psyr_4743 0.59 -0.4 5,621,450 - Psyr_4743 0.59 -1.4 5,621,481 + Psyr_4743 0.64 +0.7 5,621,482 - Psyr_4743 0.64 +0.8 5,621,482 - Psyr_4743 0.64 -1.8 5,621,482 - Psyr_4743 0.64 -2.7 5,621,482 - Psyr_4743 0.64 -1.6 5,621,482 - Psyr_4743 0.64 +1.1 5,621,586 + Psyr_4743 0.78 +2.8 5,621,586 + Psyr_4743 0.78 -1.7 5,621,587 - Psyr_4743 0.79 -0.3 5,621,644 - Psyr_4743 0.87 +1.4 5,621,644 - Psyr_4743 0.87 -0.9 5,621,644 - Psyr_4743 0.87 -1.0 5,621,703 + -1.1 5,621,704 - +0.4 5,621,773 + +0.3 5,621,774 - +0.7 5,621,774 - +0.2 5,621,774 - +0.2 5,621,774 - -2.1 5,621,802 - +0.3 5,621,802 - +0.1 5,621,919 + Psyr_4744 0.13 -0.9 5,621,919 + Psyr_4744 0.13 -0.9 5,621,919 + Psyr_4744 0.13 +2.6 5,622,501 + Psyr_4745 0.65 -0.3 5,622,501 + Psyr_4745 0.65 +0.2 5,622,737 + -1.9
Or see this region's nucleotide sequence