Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4330 and Psyr_4331 are separated by 153 nucleotides Psyr_4331 and Psyr_4332 are separated by 274 nucleotides Psyr_4332 and Psyr_4333 are separated by 25 nucleotides
Psyr_4330: Psyr_4330 - conserved domain protein, at 5,181,945 to 5,182,838
_4330
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Position (kb) 5182
5183
5184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5182.318 kb on + strand, within Psyr_4330 at 5182.328 kb on - strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.331 kb on - strand, within Psyr_4330 at 5182.331 kb on - strand, within Psyr_4330 at 5182.331 kb on - strand, within Psyr_4330 at 5182.331 kb on - strand, within Psyr_4330 at 5182.699 kb on - strand, within Psyr_4330 at 5182.699 kb on - strand, within Psyr_4330 at 5182.699 kb on - strand, within Psyr_4330 at 5182.782 kb on + strand at 5182.782 kb on + strand at 5182.783 kb on - strand at 5182.866 kb on + strand at 5182.866 kb on + strand at 5182.866 kb on + strand at 5182.866 kb on + strand at 5182.866 kb on + strand at 5182.942 kb on + strand at 5182.942 kb on + strand at 5182.942 kb on + strand at 5182.942 kb on + strand at 5182.957 kb on - strand at 5182.979 kb on - strand at 5182.979 kb on - strand at 5182.979 kb on - strand at 5182.999 kb on + strand at 5182.999 kb on + strand at 5182.999 kb on + strand at 5183.000 kb on - strand at 5183.113 kb on + strand, within Psyr_4331 at 5183.165 kb on + strand, within Psyr_4331 at 5183.720 kb on + strand, within Psyr_4331 at 5183.721 kb on - strand, within Psyr_4331 at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.939 kb on + strand at 5183.940 kb on - strand at 5183.944 kb on - strand at 5183.958 kb on + strand at 5183.970 kb on + strand at 5184.133 kb on + strand at 5184.133 kb on + strand at 5184.133 kb on + strand at 5184.134 kb on - strand at 5184.134 kb on - strand at 5184.140 kb on - strand at 5184.140 kb on - strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.267 kb on + strand, within Psyr_4332 at 5184.267 kb on + strand, within Psyr_4332 at 5184.267 kb on + strand, within Psyr_4332 at 5184.268 kb on - strand, within Psyr_4332 at 5184.268 kb on - strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.827 kb on + strand, within Psyr_4333 at 5184.827 kb on + strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,182,318 + Psyr_4330 0.42 -0.7 5,182,328 - Psyr_4330 0.43 -0.1 5,182,330 + Psyr_4330 0.43 -2.9 5,182,330 + Psyr_4330 0.43 -0.0 5,182,330 + Psyr_4330 0.43 -2.7 5,182,330 + Psyr_4330 0.43 -2.6 5,182,330 + Psyr_4330 0.43 +0.4 5,182,331 - Psyr_4330 0.43 -0.7 5,182,331 - Psyr_4330 0.43 -1.0 5,182,331 - Psyr_4330 0.43 -0.1 5,182,331 - Psyr_4330 0.43 +0.8 5,182,699 - Psyr_4330 0.84 -1.3 5,182,699 - Psyr_4330 0.84 +1.2 5,182,699 - Psyr_4330 0.84 -1.7 5,182,782 + +0.6 5,182,782 + +1.2 5,182,783 - +0.5 5,182,866 + +0.8 5,182,866 + -0.3 5,182,866 + +0.3 5,182,866 + -3.0 5,182,866 + +0.4 5,182,942 + +0.1 5,182,942 + +0.6 5,182,942 + -0.1 5,182,942 + +0.5 5,182,957 - +1.3 5,182,979 - +2.1 5,182,979 - +0.6 5,182,979 - -2.0 5,182,999 + +0.1 5,182,999 + -1.9 5,182,999 + -0.5 5,183,000 - -2.0 5,183,113 + Psyr_4331 0.13 +4.0 5,183,165 + Psyr_4331 0.19 +1.1 5,183,720 + Psyr_4331 0.79 +0.8 5,183,721 - Psyr_4331 0.79 +1.9 5,183,918 + +0.5 5,183,918 + -0.5 5,183,918 + +3.3 5,183,918 + -3.6 5,183,918 + +0.2 5,183,918 + -0.7 5,183,918 + +3.0 5,183,918 + +1.1 5,183,918 + +0.9 5,183,918 + -1.8 5,183,918 + +0.9 5,183,918 + +0.1 5,183,919 - -2.3 5,183,919 - -0.3 5,183,919 - -2.7 5,183,919 - -0.1 5,183,919 - +1.6 5,183,919 - -2.3 5,183,919 - +0.4 5,183,919 - -3.1 5,183,919 - +0.7 5,183,919 - -0.7 5,183,919 - -0.7 5,183,919 - -1.1 5,183,919 - +0.2 5,183,919 - +0.4 5,183,919 - +0.5 5,183,919 - -3.4 5,183,919 - +0.8 5,183,939 + -0.4 5,183,940 - +0.6 5,183,944 - -2.9 5,183,958 + -0.0 5,183,970 + -0.1 5,184,133 + -3.0 5,184,133 + -2.7 5,184,133 + +0.2 5,184,134 - -1.9 5,184,134 - +1.7 5,184,140 - -2.1 5,184,140 - +4.5 5,184,161 + -3.2 5,184,161 + +1.6 5,184,161 + +1.7 5,184,161 + +1.0 5,184,161 + -0.4 5,184,161 + -2.0 5,184,161 + -0.2 5,184,161 + +0.8 5,184,161 + +0.9 5,184,161 + -1.9 5,184,161 + +1.9 5,184,162 - -0.5 5,184,162 - -1.0 5,184,162 - +0.5 5,184,162 - +2.2 5,184,162 - -1.1 5,184,162 - -0.1 5,184,162 - -1.3 5,184,162 - -0.9 5,184,162 - -0.5 5,184,162 - +1.4 5,184,162 - +0.3 5,184,162 - +1.2 5,184,162 - +0.0 5,184,163 + -1.9 5,184,163 + -0.3 5,184,163 + +0.8 5,184,163 + +0.0 5,184,163 + +0.2 5,184,163 + -0.1 5,184,163 + -1.1 5,184,163 + -0.3 5,184,163 + -1.5 5,184,164 - -0.1 5,184,164 - -0.0 5,184,164 - +1.2 5,184,164 - -2.8 5,184,267 + Psyr_4332 0.18 -1.9 5,184,267 + Psyr_4332 0.18 -3.8 5,184,267 + Psyr_4332 0.18 +1.0 5,184,268 - Psyr_4332 0.18 +0.5 5,184,268 - Psyr_4332 0.18 +0.1 5,184,274 + Psyr_4332 0.19 +0.5 5,184,274 + Psyr_4332 0.19 +0.7 5,184,352 + Psyr_4332 0.38 +0.7 5,184,352 + Psyr_4332 0.38 -0.6 5,184,352 + Psyr_4332 0.38 -2.2 5,184,352 + Psyr_4332 0.38 -1.9 5,184,352 + Psyr_4332 0.38 -1.8 5,184,352 + Psyr_4332 0.38 -1.1 5,184,352 + Psyr_4332 0.38 -0.0 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 +0.8 5,184,352 + Psyr_4332 0.38 +0.7 5,184,352 + Psyr_4332 0.38 +1.1 5,184,352 + Psyr_4332 0.38 +3.3 5,184,352 + Psyr_4332 0.38 +1.9 5,184,353 - Psyr_4332 0.38 -0.3 5,184,353 - Psyr_4332 0.38 +0.6 5,184,353 - Psyr_4332 0.38 +1.7 5,184,353 - Psyr_4332 0.38 +0.2 5,184,353 - Psyr_4332 0.38 -1.4 5,184,353 - Psyr_4332 0.38 -0.7 5,184,353 - Psyr_4332 0.38 -2.3 5,184,353 - Psyr_4332 0.38 -2.6 5,184,406 + Psyr_4332 0.51 -0.7 5,184,406 + Psyr_4332 0.51 +1.9 5,184,407 - Psyr_4332 0.51 +3.7 5,184,407 - Psyr_4332 0.51 -3.8 5,184,407 - Psyr_4332 0.51 -0.8 5,184,407 - Psyr_4332 0.51 -1.1 5,184,562 - Psyr_4332 0.88 +2.5 5,184,827 + Psyr_4333 0.21 -0.6 5,184,827 + Psyr_4333 0.21 -1.1 5,184,828 - Psyr_4333 0.21 -0.9 5,184,828 - Psyr_4333 0.21 +0.0 5,184,828 - Psyr_4333 0.21 -1.1
Or see this region's nucleotide sequence