Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2690 and Psyr_2691 overlap by 4 nucleotides Psyr_2691 and Psyr_2692 overlap by 1 nucleotides Psyr_2692 and Psyr_2693 overlap by 4 nucleotides
Psyr_2690: Psyr_2690 - Glycosyl transferase, family 2, at 3,266,168 to 3,267,181
_2690
Psyr_2691: Psyr_2691 - Formyl transferase, N-terminal:Formyl transferase, C-terminal, at 3,267,178 to 3,269,172
_2691
Psyr_2692: Psyr_2692 - Polysaccharide deacetylase, at 3,269,172 to 3,270,053
_2692
Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702
_2693
Position (kb)
3267
3268
3269
3270 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3266.213 kb on + strand at 3266.214 kb on - strand at 3266.396 kb on + strand, within Psyr_2690 at 3266.397 kb on - strand, within Psyr_2690 at 3266.798 kb on + strand, within Psyr_2690 at 3266.799 kb on - strand, within Psyr_2690 at 3267.059 kb on + strand, within Psyr_2690 at 3267.060 kb on - strand, within Psyr_2690 at 3267.060 kb on - strand, within Psyr_2690 at 3267.150 kb on + strand at 3267.158 kb on + strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.160 kb on + strand at 3267.160 kb on + strand at 3267.161 kb on - strand at 3267.161 kb on - strand at 3267.161 kb on - strand at 3267.186 kb on + strand at 3267.186 kb on + strand at 3267.254 kb on - strand at 3267.430 kb on + strand, within Psyr_2691 at 3267.430 kb on + strand, within Psyr_2691 at 3267.430 kb on + strand, within Psyr_2691 at 3267.431 kb on - strand, within Psyr_2691 at 3267.431 kb on - strand, within Psyr_2691 at 3267.444 kb on - strand, within Psyr_2691 at 3267.776 kb on - strand, within Psyr_2691 at 3267.838 kb on + strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.840 kb on + strand, within Psyr_2691 at 3268.045 kb on + strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.381 kb on + strand, within Psyr_2691 at 3268.381 kb on + strand, within Psyr_2691 at 3268.456 kb on + strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.496 kb on - strand, within Psyr_2691 at 3268.576 kb on + strand, within Psyr_2691 at 3269.011 kb on + strand at 3269.011 kb on + strand at 3269.012 kb on - strand at 3269.012 kb on - strand at 3269.376 kb on + strand, within Psyr_2692 at 3269.376 kb on + strand, within Psyr_2692 at 3269.557 kb on + strand, within Psyr_2692 at 3269.558 kb on - strand, within Psyr_2692 at 3269.780 kb on - strand, within Psyr_2692 at 3269.780 kb on - strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.857 kb on - strand, within Psyr_2692 at 3269.857 kb on - strand, within Psyr_2692 at 3269.914 kb on + strand, within Psyr_2692 at 3270.055 kb on - strand at 3270.055 kb on - strand at 3270.107 kb on + strand at 3270.108 kb on - strand at 3270.108 kb on - strand at 3270.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 3,266,213 + +1.3 3,266,214 - +1.3 3,266,396 + Psyr_2690 0.22 -0.8 3,266,397 - Psyr_2690 0.23 +1.0 3,266,798 + Psyr_2690 0.62 +1.2 3,266,799 - Psyr_2690 0.62 +1.4 3,267,059 + Psyr_2690 0.88 -0.3 3,267,060 - Psyr_2690 0.88 -3.4 3,267,060 - Psyr_2690 0.88 +1.3 3,267,150 + -2.1 3,267,158 + -0.3 3,267,159 - -0.1 3,267,159 - -0.0 3,267,159 - -2.5 3,267,159 - +1.4 3,267,160 + -2.9 3,267,160 + -0.6 3,267,161 - +2.8 3,267,161 - +0.1 3,267,161 - +0.2 3,267,186 + -0.4 3,267,186 + -1.8 3,267,254 - -0.7 3,267,430 + Psyr_2691 0.13 +0.8 3,267,430 + Psyr_2691 0.13 +0.9 3,267,430 + Psyr_2691 0.13 +1.0 3,267,431 - Psyr_2691 0.13 +1.0 3,267,431 - Psyr_2691 0.13 -0.5 3,267,444 - Psyr_2691 0.13 -0.0 3,267,776 - Psyr_2691 0.30 -1.8 3,267,838 + Psyr_2691 0.33 -1.2 3,267,839 - Psyr_2691 0.33 -1.4 3,267,839 - Psyr_2691 0.33 -2.4 3,267,839 - Psyr_2691 0.33 -1.0 3,267,840 + Psyr_2691 0.33 -3.1 3,268,045 + Psyr_2691 0.43 -0.5 3,268,046 - Psyr_2691 0.44 +1.6 3,268,046 - Psyr_2691 0.44 -0.8 3,268,046 - Psyr_2691 0.44 +1.5 3,268,381 + Psyr_2691 0.60 +0.4 3,268,381 + Psyr_2691 0.60 -2.0 3,268,456 + Psyr_2691 0.64 +1.6 3,268,457 - Psyr_2691 0.64 +0.2 3,268,457 - Psyr_2691 0.64 +0.5 3,268,457 - Psyr_2691 0.64 +1.4 3,268,496 - Psyr_2691 0.66 +2.0 3,268,576 + Psyr_2691 0.70 -2.1 3,269,011 + +0.1 3,269,011 + +2.6 3,269,012 - +1.8 3,269,012 - -2.0 3,269,376 + Psyr_2692 0.23 +0.8 3,269,376 + Psyr_2692 0.23 +1.1 3,269,557 + Psyr_2692 0.44 -2.5 3,269,558 - Psyr_2692 0.44 +2.6 3,269,780 - Psyr_2692 0.69 +0.3 3,269,780 - Psyr_2692 0.69 +0.2 3,269,817 + Psyr_2692 0.73 +1.4 3,269,817 + Psyr_2692 0.73 +4.0 3,269,817 + Psyr_2692 0.73 -2.3 3,269,817 + Psyr_2692 0.73 -0.4 3,269,817 + Psyr_2692 0.73 +1.6 3,269,857 - Psyr_2692 0.78 -2.1 3,269,857 - Psyr_2692 0.78 -3.1 3,269,914 + Psyr_2692 0.84 -1.1 3,270,055 - +1.1 3,270,055 - +0.9 3,270,107 + +0.3 3,270,108 - +1.7 3,270,108 - -0.4 3,270,159 - +1.2
Or see this region's nucleotide sequence