Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1768

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
2,006,839	+				-2.2
2,006,858	+				-0.5
2,006,858	+				-0.4
2,006,858	+				-1.8
2,006,859	-				+0.3
2,006,859	-				+0.5
2,006,859	-				-0.9
2,006,859	-				+0.5
2,006,871	-				-2.8
2,006,887	+				+1.0
2,006,888	-				-1.4
2,006,890	+				+0.9
2,006,903	+				+1.2
2,006,903	+				+0.6
2,006,903	+				-2.4
2,006,903	+				-0.7
2,006,903	+				+1.3
2,006,904	-				-0.2
2,006,904	-				-1.3
2,006,904	-				-2.3
2,006,905	+				-2.6
2,006,906	-				+0.7
2,006,906	-				-3.3
2,006,984	-				+0.1
2,007,001	+				+1.0
2,007,001	+				-2.1
2,007,001	+				-2.9
2,007,002	-				-1.5
2,007,002	-				+1.2
2,007,002	-				+0.8
2,007,002	-				-1.8
2,007,002	-				-1.5
2,007,002	-				+0.7
2,007,002	-				+1.0
2,007,002	-				-1.7
2,007,003	+				-0.3
2,007,003	+				-0.0
2,007,003	+				+1.3
2,007,004	-				+0.5
2,007,008	-				-2.7
2,007,008	-				-1.3
2,007,055	+				-0.7
2,007,104	-		Psyr_1767	0.13	-0.1
2,007,182	+		Psyr_1767	0.27	-0.2
2,007,182	+		Psyr_1767	0.27	-1.0
2,007,183	-		Psyr_1767	0.27	+1.0
2,007,183	-		Psyr_1767	0.27	-1.0
2,007,221	+		Psyr_1767	0.33	-0.8
2,007,221	+		Psyr_1767	0.33	+1.3
2,007,221	+		Psyr_1767	0.33	+0.0
2,007,221	+		Psyr_1767	0.33	+0.4
2,007,221	+		Psyr_1767	0.33	-0.7
2,007,221	+		Psyr_1767	0.33	-2.2
2,007,221	+		Psyr_1767	0.33	-0.5
2,007,221	+		Psyr_1767	0.33	+0.5
2,007,221	+		Psyr_1767	0.33	+0.7
2,007,221	+		Psyr_1767	0.33	-0.7
2,007,222	-		Psyr_1767	0.34	-2.0
2,007,222	-		Psyr_1767	0.34	-1.7
2,007,222	-		Psyr_1767	0.34	-2.6
2,007,226	+		Psyr_1767	0.34	+0.3
2,007,281	+		Psyr_1767	0.44	-2.3
2,007,442	-		Psyr_1767	0.71	-0.4
2,007,479	+		Psyr_1767	0.77	-1.0
2,007,480	-		Psyr_1767	0.78	+1.7
2,007,480	-		Psyr_1767	0.78	+0.7
2,007,650	+				-2.1
2,007,650	+				-1.5
2,007,650	+				-0.4
2,007,754	+				-1.5
2,007,754	+				-0.6
2,007,754	+				+1.4
2,007,755	-				+1.7
2,007,755	-				-1.5
2,007,755	-				+0.9
2,007,755	-				+0.6
2,007,775	+				-1.2
2,007,776	-				-2.0
2,007,776	-				+0.5
2,007,846	+				-3.3
2,008,029	+				+4.3
2,008,030	-				+1.0
2,008,066	-				-0.5
2,008,220	+				+0.1
2,008,220	+				-0.6
2,008,221	-				-1.2
2,008,240	+				-0.2
2,008,384	+		Psyr_1768	0.12	+0.4
2,008,544	-		Psyr_1768	0.15	+0.3
2,008,565	-		Psyr_1768	0.15	-0.8
2,008,687	+		Psyr_1768	0.18	+0.9
2,008,688	-		Psyr_1768	0.18	+0.8
2,008,844	+		Psyr_1768	0.21	-0.4
2,008,845	-		Psyr_1768	0.21	+1.3
2,008,845	-		Psyr_1768	0.21	-0.2
2,008,846	+		Psyr_1768	0.21	+1.7
2,008,846	+		Psyr_1768	0.21	-2.5
2,008,846	+		Psyr_1768	0.21	-1.2
2,008,847	-		Psyr_1768	0.21	-0.8
2,008,847	-		Psyr_1768	0.21	+2.8
2,008,847	-		Psyr_1768	0.21	+2.7
2,008,853	-		Psyr_1768	0.21	-1.3
2,009,285	-		Psyr_1768	0.29	+1.3
2,009,285	-		Psyr_1768	0.29	+0.2
2,009,285	-		Psyr_1768	0.29	+1.2
2,009,286	+		Psyr_1768	0.29	+0.3
2,009,286	+		Psyr_1768	0.29	+0.8
2,009,286	+		Psyr_1768	0.29	-3.1
2,009,286	+		Psyr_1768	0.29	-0.7
2,009,287	-		Psyr_1768	0.29	+3.7
2,009,346	+		Psyr_1768	0.30	+1.3
2,009,665	+		Psyr_1768	0.36	+0.1
2,009,666	-		Psyr_1768	0.37	+2.8
2,009,666	-		Psyr_1768	0.37	-1.8
2,009,775	+		Psyr_1768	0.39	-0.7
2,009,776	-		Psyr_1768	0.39	+0.0
2,009,813	+		Psyr_1768	0.39	+1.1
2,009,814	-		Psyr_1768	0.39	+1.1
2,009,891	-		Psyr_1768	0.41	-0.9
2,009,940	+		Psyr_1768	0.42	+2.0
2,009,993	+		Psyr_1768	0.43	+0.7
2,009,993	+		Psyr_1768	0.43	-0.0
2,009,993	+		Psyr_1768	0.43	+2.7
2,009,993	+		Psyr_1768	0.43	-0.3
2,009,993	+		Psyr_1768	0.43	+0.5
2,009,994	-		Psyr_1768	0.43	-2.1
2,009,994	-		Psyr_1768	0.43	-0.4
2,009,994	-		Psyr_1768	0.43	+0.5
2,009,994	-		Psyr_1768	0.43	+2.0
2,010,014	+		Psyr_1768	0.43	+1.5
2,010,014	+		Psyr_1768	0.43	+0.3
2,010,015	-		Psyr_1768	0.43	+1.9
2,010,025	+		Psyr_1768	0.43	+0.3
2,010,025	+		Psyr_1768	0.43	-2.6
2,010,025	+		Psyr_1768	0.43	+2.5
2,010,025	+		Psyr_1768	0.43	+0.4
2,010,025	+		Psyr_1768	0.43	+0.5
2,010,025	+		Psyr_1768	0.43	+1.1
2,010,026	-		Psyr_1768	0.43	+0.6
2,010,026	-		Psyr_1768	0.43	+0.8
2,010,026	-		Psyr_1768	0.43	+0.3
2,010,026	-		Psyr_1768	0.43	-1.8
2,010,026	-		Psyr_1768	0.43	+0.6
2,010,026	-		Psyr_1768	0.43	+0.8
2,010,026	-		Psyr_1768	0.43	+0.1
2,010,026	-		Psyr_1768	0.43	+0.5
2,010,150	-		Psyr_1768	0.46	-3.0
2,010,201	-		Psyr_1768	0.47	-0.8
2,010,201	-		Psyr_1768	0.47	+1.6
2,010,358	+		Psyr_1768	0.50	+1.2
2,010,358	+		Psyr_1768	0.50	+1.0
2,010,358	+		Psyr_1768	0.50	+0.4
2,010,358	+		Psyr_1768	0.50	-0.4
2,010,439	+		Psyr_1768	0.51	+2.3
2,010,439	+		Psyr_1768	0.51	+1.3
2,010,439	+		Psyr_1768	0.51	-0.4
2,010,440	-		Psyr_1768	0.51	-2.0
2,010,440	-		Psyr_1768	0.51	+1.4
2,010,440	-		Psyr_1768	0.51	-2.3
2,010,440	-		Psyr_1768	0.51	+0.6
2,010,477	+		Psyr_1768	0.52	-1.3
2,010,477	+		Psyr_1768	0.52	+1.5
2,010,496	+		Psyr_1768	0.52	-0.3
2,010,497	-		Psyr_1768	0.52	-0.7
2,010,763	+		Psyr_1768	0.57	-3.1
2,010,763	+		Psyr_1768	0.57	-1.7
2,010,763	+		Psyr_1768	0.57	-2.0
2,010,764	-		Psyr_1768	0.58	+0.7
2,010,850	+		Psyr_1768	0.59	+1.7
2,010,950	-		Psyr_1768	0.61	-1.0
2,011,083	+		Psyr_1768	0.64	+1.5
2,011,083	+		Psyr_1768	0.64	+0.1
2,011,084	-		Psyr_1768	0.64	+0.3
2,011,084	-		Psyr_1768	0.64	-1.7
2,011,087	+		Psyr_1768	0.64	-1.0
2,011,087	+		Psyr_1768	0.64	-0.1
2,011,087	+		Psyr_1768	0.64	-2.1
2,011,088	-		Psyr_1768	0.64	-0.9
2,011,133	-		Psyr_1768	0.65	+1.9
2,011,199	+		Psyr_1768	0.66	+1.7
2,011,199	+		Psyr_1768	0.66	-2.3
2,011,199	+		Psyr_1768	0.66	+1.0
2,011,199	+		Psyr_1768	0.66	+1.0
2,011,199	+		Psyr_1768	0.66	-0.4
2,011,199	+		Psyr_1768	0.66	-1.1
2,011,199	+		Psyr_1768	0.66	+0.3
2,011,199	+		Psyr_1768	0.66	-2.8
2,011,199	+		Psyr_1768	0.66	+1.3
2,011,199	+		Psyr_1768	0.66	-2.1
2,011,199	+		Psyr_1768	0.66	+1.0
2,011,199	+		Psyr_1768	0.66	-0.2
2,011,200	-		Psyr_1768	0.66	+2.3
2,011,200	-		Psyr_1768	0.66	+0.1
2,011,200	-		Psyr_1768	0.66	+0.5
2,011,200	-		Psyr_1768	0.66	-3.1
2,011,200	-		Psyr_1768	0.66	+3.1
2,011,200	-		Psyr_1768	0.66	+1.3
2,011,200	-		Psyr_1768	0.66	+1.4
2,011,200	-		Psyr_1768	0.66	+2.3
2,011,200	-		Psyr_1768	0.66	-1.2
2,011,200	-		Psyr_1768	0.66	+1.0
2,011,200	-		Psyr_1768	0.66	+0.6
2,011,200	-		Psyr_1768	0.66	+2.0
2,011,200	-		Psyr_1768	0.66	-2.7
2,011,225	+		Psyr_1768	0.66	-0.1
2,011,225	+		Psyr_1768	0.66	-1.5
2,011,226	-		Psyr_1768	0.66	-3.9
2,011,226	-		Psyr_1768	0.66	+1.5
2,011,226	-		Psyr_1768	0.66	-2.1
2,011,226	-		Psyr_1768	0.66	+0.6
2,011,226	-		Psyr_1768	0.66	-1.5
2,011,424	+		Psyr_1768	0.70	+0.8
2,011,470	+		Psyr_1768	0.71	-0.7
2,011,470	+		Psyr_1768	0.71	+1.3
2,011,481	-		Psyr_1768	0.71	+1.1
2,011,575	+		Psyr_1768	0.73	-1.8
2,011,575	+		Psyr_1768	0.73	-2.6
2,011,576	-		Psyr_1768	0.73	-1.3
2,011,576	-		Psyr_1768	0.73	-1.0
2,011,576	-		Psyr_1768	0.73	-2.0
2,011,576	-		Psyr_1768	0.73	+0.7
2,011,746	-		Psyr_1768	0.76	-0.3
2,011,746	-		Psyr_1768	0.76	+2.9
2,011,811	+		Psyr_1768	0.78	+0.3
2,011,884	+		Psyr_1768	0.79	+2.3
2,011,885	-		Psyr_1768	0.79	+0.2
2,011,888	+		Psyr_1768	0.79	-1.8
2,011,889	-		Psyr_1768	0.79	-3.0
2,011,908	+		Psyr_1768	0.79	+0.0
2,011,908	+		Psyr_1768	0.79	+0.7
2,011,915	+		Psyr_1768	0.80	+1.3
2,011,915	+		Psyr_1768	0.80	+0.3
2,011,916	-		Psyr_1768	0.80	-0.3
2,011,916	-		Psyr_1768	0.80	+0.4
2,011,939	+		Psyr_1768	0.80	-0.4
2,011,939	+		Psyr_1768	0.80	+0.9
2,011,940	-		Psyr_1768	0.80	-0.5
2,011,992	-		Psyr_1768	0.81	+1.3
2,012,080	-		Psyr_1768	0.83	-4.0
2,012,117	+		Psyr_1768	0.83	+2.2
2,012,117	+		Psyr_1768	0.83	-2.8
2,012,118	-		Psyr_1768	0.83	-1.3
2,012,118	-		Psyr_1768	0.83	-0.5
2,012,126	+		Psyr_1768	0.84	+1.3
2,012,126	+		Psyr_1768	0.84	-1.0
2,012,209	+		Psyr_1768	0.85	+0.2
2,012,209	+		Psyr_1768	0.85	+1.1
2,012,212	+		Psyr_1768	0.85	-0.8
2,012,212	+		Psyr_1768	0.85	+1.3
2,012,213	-		Psyr_1768	0.85	-2.5
2,012,213	-		Psyr_1768	0.85	+1.0
2,012,213	-		Psyr_1768	0.85	+0.8
2,012,213	-		Psyr_1768	0.85	-1.9
2,012,329	+		Psyr_1768	0.87	-2.8
2,012,329	+		Psyr_1768	0.87	-0.2
2,012,329	+		Psyr_1768	0.87	+1.4
2,012,358	+		Psyr_1768	0.88	+1.8
2,012,363	-		Psyr_1768	0.88	+2.0
2,012,410	+		Psyr_1768	0.89	+0.4
2,012,410	+		Psyr_1768	0.89	+1.7
2,012,411	-		Psyr_1768	0.89	-0.3
2,012,513	+				-3.3
2,012,513	+				-1.1
2,012,513	+				-0.1
2,012,514	-				+0.6
2,012,514	-				-0.8
2,012,517	+				+0.2
2,012,518	-				+0.4
2,012,518	-				+1.3
2,012,521	+				-0.1
2,012,521	+				-1.0
2,012,522	-				+1.9
2,012,610	+				+0.5
2,012,638	+				+2.2
2,012,638	+				-1.3
2,012,639	-				+2.7
2,012,639	-				+1.1
2,012,639	-				+1.3
2,012,690	-				-2.1
2,012,744	-				-0.3
2,013,039	+				+3.6
2,013,093	+				+0.1
2,013,093	+				-1.7
2,013,093	+				-0.7
2,013,094	-				-1.6
2,013,094	-				+1.3
2,013,094	-				+2.3
2,013,094	-				+0.9
2,013,094	-				-1.5
2,013,094	-				+0.6
2,013,094	-				-2.9
2,013,094	-				+1.7
2,013,095	+				-0.9
2,013,095	+				+3.0
2,013,095	+				+0.6
2,013,095	+				+0.3
2,013,096	-				+1.1
2,013,096	-				+1.0
2,013,096	-				-0.3
2,013,151	-		Psyr_1769	0.11	-1.1
2,013,388	-		Psyr_1769	0.31	+1.7
2,013,749	+		Psyr_1769	0.62	-1.0
2,013,749	+		Psyr_1769	0.62	+0.7
2,013,877	-		Psyr_1769	0.74	-0.1
2,013,981	+		Psyr_1769	0.83	+2.5
2,013,982	-		Psyr_1769	0.83	-0.1