Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1509

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,694,750	+		Psyr_1508	0.66	-1.7
1,694,750	+		Psyr_1508	0.66	-1.0
1,694,750	+		Psyr_1508	0.66	+1.1
1,694,751	-		Psyr_1508	0.66	-1.7
1,694,751	-		Psyr_1508	0.66	-2.8
1,694,751	-		Psyr_1508	0.66	-1.4
1,694,751	-		Psyr_1508	0.66	-1.5
1,694,751	-		Psyr_1508	0.66	-0.5
1,694,751	-		Psyr_1508	0.66	-1.3
1,694,754	+		Psyr_1508	0.66	+1.0
1,694,754	+		Psyr_1508	0.66	-1.5
1,694,754	+		Psyr_1508	0.66	-1.0
1,694,754	+		Psyr_1508	0.66	-0.9
1,694,755	-		Psyr_1508	0.66	-1.3
1,694,755	-		Psyr_1508	0.66	+0.6
1,694,755	-		Psyr_1508	0.66	-1.3
1,694,755	-		Psyr_1508	0.66	-1.1
1,694,760	+		Psyr_1508	0.67	+1.3
1,694,760	+		Psyr_1508	0.67	-2.1
1,694,760	+		Psyr_1508	0.67	+1.5
1,694,760	+		Psyr_1508	0.67	+0.4
1,694,760	+		Psyr_1508	0.67	+0.7
1,694,760	+		Psyr_1508	0.67	-0.1
1,694,760	+		Psyr_1508	0.67	+0.2
1,694,760	+		Psyr_1508	0.67	+1.9
1,694,760	+		Psyr_1508	0.67	-3.0
1,694,760	+		Psyr_1508	0.67	+1.2
1,694,760	+		Psyr_1508	0.67	+1.0
1,694,760	+		Psyr_1508	0.67	-1.0
1,694,760	+		Psyr_1508	0.67	+0.9
1,694,760	+		Psyr_1508	0.67	-1.9
1,694,760	+		Psyr_1508	0.67	+0.3
1,694,760	+		Psyr_1508	0.67	-0.4
1,694,760	+		Psyr_1508	0.67	-1.8
1,694,760	+		Psyr_1508	0.67	-1.8
1,694,761	-		Psyr_1508	0.67	+2.9
1,694,761	-		Psyr_1508	0.67	+0.3
1,694,761	-		Psyr_1508	0.67	-0.8
1,694,761	-		Psyr_1508	0.67	+0.9
1,694,761	-		Psyr_1508	0.67	+4.3
1,694,761	-		Psyr_1508	0.67	-0.6
1,694,761	-		Psyr_1508	0.67	+0.3
1,694,761	-		Psyr_1508	0.67	+0.1
1,694,761	-		Psyr_1508	0.67	-1.1
1,694,762	+		Psyr_1508	0.67	-1.9
1,694,762	+		Psyr_1508	0.67	-0.0
1,694,762	+		Psyr_1508	0.67	-1.1
1,694,762	+		Psyr_1508	0.67	+0.8
1,694,762	+		Psyr_1508	0.67	-3.6
1,694,762	+		Psyr_1508	0.67	+1.5
1,694,763	-		Psyr_1508	0.67	-1.8
1,694,763	-		Psyr_1508	0.67	-0.4
1,694,807	+		Psyr_1508	0.71	-0.1
1,694,807	+		Psyr_1508	0.71	-0.8
1,694,808	-		Psyr_1508	0.72	-2.3
1,694,816	-		Psyr_1508	0.72	-2.2
1,694,859	+		Psyr_1508	0.77	+1.2
1,694,859	+		Psyr_1508	0.77	+0.1
1,694,859	+		Psyr_1508	0.77	-1.6
1,694,859	+		Psyr_1508	0.77	-0.1
1,694,860	-		Psyr_1508	0.77	+2.5
1,694,860	-		Psyr_1508	0.77	+5.3
1,694,860	-		Psyr_1508	0.77	+1.4
1,694,860	-		Psyr_1508	0.77	-2.3
1,694,860	-		Psyr_1508	0.77	+2.5
1,694,860	-		Psyr_1508	0.77	+3.5
1,694,861	+		Psyr_1508	0.77	-1.0
1,694,861	+		Psyr_1508	0.77	-0.7
1,694,861	+		Psyr_1508	0.77	-2.3
1,694,862	-		Psyr_1508	0.77	+3.1
1,694,862	-		Psyr_1508	0.77	+1.2
1,694,862	-		Psyr_1508	0.77	+2.4
1,694,862	-		Psyr_1508	0.77	-0.1
1,695,024	+				+0.2
1,695,024	+				-0.5
1,695,024	+				+0.2
1,695,024	+				+0.8
1,695,024	+				-3.8
1,695,024	+				+0.3
1,695,025	-				+3.2
1,695,025	-				+0.5
1,695,065	+				+0.5
1,695,076	-				+2.3
1,695,131	+				-1.5
1,695,131	+				-1.7
1,695,132	-				+2.7
1,695,144	+				+1.7
1,695,144	+				-1.8
1,695,144	+				-1.2
1,695,144	+				-1.3
1,695,144	+				+0.8
1,695,145	-				+3.8
1,695,145	-				-0.3
1,695,186	-				-0.8
1,695,230	-				-0.5
1,695,248	+				+0.6
1,695,292	+				+1.2
1,695,347	+				-0.8
1,695,347	+				-0.9
1,695,347	+				-2.9
1,695,348	-				+0.1
1,695,348	-				-2.0
1,695,348	-				-1.7
1,695,360	-				-0.8
1,695,360	-				-1.1
1,695,374	+				+2.2
1,695,375	-				-0.9
1,695,432	+				-2.1
1,695,494	+				+3.4
1,695,494	+				+0.5
1,695,495	-				-0.4
1,695,495	-				+1.5
1,695,495	-				-2.0
1,695,510	+				-1.1
1,695,511	-				-2.5
1,695,537	+				+0.5
1,695,537	+				-2.0
1,695,537	+				-0.1
1,695,537	+				+1.9
1,695,538	-				+3.1
1,695,538	-				-1.2
1,695,568	+				-0.5
1,695,569	-				+2.3
1,695,569	-				-1.8
1,695,569	-				+0.3
1,695,922	+		Psyr_1509	0.64	-0.3
1,695,922	+		Psyr_1509	0.64	-1.8
1,695,929	-		Psyr_1509	0.66	+2.2
1,695,962	+		Psyr_1509	0.73	+2.4
1,695,963	-		Psyr_1509	0.73	+0.7
1,696,024	+		Psyr_1509	0.87	+0.8
1,696,024	+		Psyr_1509	0.87	+0.9
1,696,025	-		Psyr_1509	0.88	+0.4
1,696,046	+				-3.2
1,696,046	+				-0.3
1,696,047	-				+1.5
1,696,047	-				+3.1
1,696,069	+				+2.1
1,696,070	-				-0.2
1,696,070	-				+0.0
1,696,070	-				-1.5
1,696,070	-				-0.5
1,696,082	+				+0.5
1,696,082	+				+1.5
1,696,082	+				+1.5
1,696,083	-				+1.0
1,696,083	-				-1.6
1,696,083	-				-1.2
1,696,100	+				-0.7
1,696,100	+				-0.7
1,696,101	-				-0.5
1,696,101	-				+2.5
1,696,101	-				+2.0
1,696,101	-				+0.7
1,696,101	-				+1.2
1,696,101	-				-2.0
1,696,238	+				-0.7
1,696,238	+				-1.3
1,696,238	+				+0.6
1,696,239	-				-2.5
1,696,239	-				+1.9
1,696,239	-				+0.0
1,696,242	+				+4.2
1,696,243	-				-2.1
1,696,243	-				-1.2
1,696,369	-		Psyr_1510	0.18	-2.3
1,696,369	-		Psyr_1510	0.18	+0.8
1,696,422	-		Psyr_1510	0.22	+1.8
1,696,484	+		Psyr_1510	0.27	-2.6
1,696,485	-		Psyr_1510	0.27	+0.5
1,696,503	-		Psyr_1510	0.28	+1.9
1,696,532	+		Psyr_1510	0.30	+1.0
1,696,533	-		Psyr_1510	0.30	+1.5
1,696,533	-		Psyr_1510	0.30	-3.1
1,696,533	-		Psyr_1510	0.30	+1.1
1,696,559	+		Psyr_1510	0.32	-0.8
1,696,560	-		Psyr_1510	0.32	-1.5
1,696,668	-		Psyr_1510	0.40	-1.1
1,696,668	-		Psyr_1510	0.40	+1.5
1,696,669	+		Psyr_1510	0.40	+1.7
1,696,669	+		Psyr_1510	0.40	-3.2
1,696,669	+		Psyr_1510	0.40	-1.4
1,696,669	+		Psyr_1510	0.40	-1.5
1,696,669	+		Psyr_1510	0.40	+1.3
1,696,669	+		Psyr_1510	0.40	-3.2
1,696,669	+		Psyr_1510	0.40	+0.9
1,696,669	+		Psyr_1510	0.40	-2.4
1,696,669	+		Psyr_1510	0.40	-0.0
1,696,669	+		Psyr_1510	0.40	-0.7
1,696,669	+		Psyr_1510	0.40	+0.6
1,696,669	+		Psyr_1510	0.40	-0.8
1,696,669	+		Psyr_1510	0.40	+1.8
1,696,669	+		Psyr_1510	0.40	+0.0
1,696,669	+		Psyr_1510	0.40	+2.5
1,696,669	+		Psyr_1510	0.40	+0.7
1,696,670	-		Psyr_1510	0.40	+2.5
1,696,670	-		Psyr_1510	0.40	+1.0
1,696,670	-		Psyr_1510	0.40	-2.3
1,696,670	-		Psyr_1510	0.40	-0.9
1,696,670	-		Psyr_1510	0.40	+0.4
1,696,670	-		Psyr_1510	0.40	+1.3
1,696,670	-		Psyr_1510	0.40	+0.6
1,696,670	-		Psyr_1510	0.40	-0.3
1,696,670	-		Psyr_1510	0.40	-3.4
1,696,670	-		Psyr_1510	0.40	+1.2
1,696,670	-		Psyr_1510	0.40	-1.5
1,696,670	-		Psyr_1510	0.40	+1.4
1,696,670	-		Psyr_1510	0.40	+0.1
1,696,670	-		Psyr_1510	0.40	+1.7
1,696,670	-		Psyr_1510	0.40	-0.4
1,696,670	-		Psyr_1510	0.40	-0.2
1,696,670	-		Psyr_1510	0.40	+1.4
1,696,670	-		Psyr_1510	0.40	+0.2
1,696,800	+		Psyr_1510	0.49	-2.4
1,696,800	+		Psyr_1510	0.49	-0.1
1,696,801	-		Psyr_1510	0.49	-2.0
1,696,929	-		Psyr_1510	0.58	+0.9
1,696,929	-		Psyr_1510	0.58	-1.7
1,697,000	+		Psyr_1510	0.63	-2.1
1,697,001	-		Psyr_1510	0.63	+2.4
1,697,033	-		Psyr_1510	0.66	+0.8