Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1467

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,653,983	+		Psyr_1465	0.52	-2.9
1,653,983	+		Psyr_1465	0.52	+0.4
1,653,983	+		Psyr_1465	0.52	-0.8
1,653,983	+		Psyr_1465	0.52	-0.1
1,653,983	+		Psyr_1465	0.52	-1.8
1,653,984	-		Psyr_1465	0.52	-0.5
1,653,984	-		Psyr_1465	0.52	-1.8
1,653,984	-		Psyr_1465	0.52	-2.0
1,653,984	-		Psyr_1465	0.52	-1.2
1,653,984	-		Psyr_1465	0.52	+1.3
1,654,178	+		Psyr_1465	0.84	-2.6
1,654,184	+		Psyr_1465	0.85	-2.2
1,654,184	+		Psyr_1465	0.85	-0.5
1,654,184	+		Psyr_1465	0.85	+2.5
1,654,185	-		Psyr_1465	0.85	+2.3
1,654,224	+				+1.7
1,654,225	-				+4.2
1,654,225	-				-1.2
1,654,274	+				-3.5
1,654,274	+				+0.7
1,654,274	+				+0.0
1,654,274	+				-0.5
1,654,274	+				+0.6
1,654,395	+		Psyr_1466	0.10	+2.8
1,654,396	-		Psyr_1466	0.11	+0.2
1,654,396	-		Psyr_1466	0.11	+0.2
1,654,472	+		Psyr_1466	0.25	-0.4
1,654,472	+		Psyr_1466	0.25	-0.2
1,654,472	+		Psyr_1466	0.25	-0.6
1,654,473	-		Psyr_1466	0.25	+0.3
1,654,473	-		Psyr_1466	0.25	-0.3
1,654,473	-		Psyr_1466	0.25	+1.1
1,654,486	-		Psyr_1466	0.28	-0.5
1,654,572	+		Psyr_1466	0.44	+1.5
1,654,572	+		Psyr_1466	0.44	-1.3
1,654,572	+		Psyr_1466	0.44	-0.1
1,654,572	+		Psyr_1466	0.44	+2.8
1,654,572	+		Psyr_1466	0.44	-0.8
1,654,572	+		Psyr_1466	0.44	+3.8
1,654,572	+		Psyr_1466	0.44	-0.5
1,654,572	+		Psyr_1466	0.44	+0.0
1,654,572	+		Psyr_1466	0.44	-2.1
1,654,572	+		Psyr_1466	0.44	-2.1
1,654,572	+		Psyr_1466	0.44	+1.5
1,654,572	+		Psyr_1466	0.44	-0.4
1,654,572	+		Psyr_1466	0.44	-0.6
1,654,573	-		Psyr_1466	0.44	-1.5
1,654,573	-		Psyr_1466	0.44	-0.1
1,654,573	-		Psyr_1466	0.44	-0.6
1,654,573	-		Psyr_1466	0.44	+1.9
1,654,573	-		Psyr_1466	0.44	+1.3
1,654,573	-		Psyr_1466	0.44	-0.0
1,654,573	-		Psyr_1466	0.44	-1.7
1,654,573	-		Psyr_1466	0.44	-1.5
1,654,573	-		Psyr_1466	0.44	+1.5
1,654,573	-		Psyr_1466	0.44	-1.2
1,654,573	-		Psyr_1466	0.44	-3.3
1,654,574	+		Psyr_1466	0.45	+2.2
1,654,574	+		Psyr_1466	0.45	-0.0
1,654,574	+		Psyr_1466	0.45	+0.8
1,654,574	+		Psyr_1466	0.45	+3.1
1,654,574	+		Psyr_1466	0.45	-0.2
1,654,574	+		Psyr_1466	0.45	+1.0
1,654,574	+		Psyr_1466	0.45	+1.3
1,654,575	-		Psyr_1466	0.45	-2.6
1,654,575	-		Psyr_1466	0.45	-0.2
1,654,575	-		Psyr_1466	0.45	-2.8
1,654,575	-		Psyr_1466	0.45	+2.4
1,654,659	+		Psyr_1466	0.61	-0.4
1,654,659	+		Psyr_1466	0.61	+0.1
1,654,659	+		Psyr_1466	0.61	-4.4
1,654,659	+		Psyr_1466	0.61	-0.0
1,654,660	-		Psyr_1466	0.61	+1.5
1,654,685	+		Psyr_1466	0.66	-0.8
1,654,685	+		Psyr_1466	0.66	-2.2
1,654,686	-		Psyr_1466	0.66	+1.5
1,654,686	-		Psyr_1466	0.66	+2.1
1,654,686	-		Psyr_1466	0.66	-0.1
1,654,715	+		Psyr_1466	0.71	-1.2
1,654,716	-		Psyr_1466	0.72	+0.7
1,654,716	-		Psyr_1466	0.72	+1.0
1,654,737	-		Psyr_1466	0.76	+0.5
1,654,843	+				+2.1
1,654,843	+				-0.7
1,654,844	-				+1.6
1,654,881	+				-2.0
1,654,881	+				+0.5
1,654,881	+				-1.7
1,654,882	-				+1.2
1,654,882	-				-0.3
1,654,884	+				-1.0
1,654,921	+				+0.7
1,654,921	+				+2.3
1,654,921	+				-0.1
1,654,922	-				-1.3
1,654,922	-				+0.1
1,654,922	-				+4.3
1,654,922	-				-2.6
1,654,927	+				+0.4
1,654,957	+				+0.7
1,654,957	+				+0.7
1,654,957	+				+0.9
1,654,957	+				+1.3
1,654,958	-				-1.8
1,654,958	-				-2.7
1,654,958	-				+1.7
1,655,043	-		Psyr_1467	0.15	+0.3
1,655,049	+		Psyr_1467	0.16	+1.4
1,655,049	+		Psyr_1467	0.16	+1.4
1,655,049	+		Psyr_1467	0.16	+1.7
1,655,050	-		Psyr_1467	0.16	+1.2
1,655,050	-		Psyr_1467	0.16	+0.0
1,655,384	-		Psyr_1467	0.70	+1.3
1,655,386	+		Psyr_1467	0.71	-0.7
1,655,387	-		Psyr_1467	0.71	-0.4
1,655,387	-		Psyr_1467	0.71	+2.1
1,655,426	-		Psyr_1467	0.77	+1.1
1,655,568	+				-0.3
1,655,569	-				+2.5
1,655,569	-				+0.5
1,655,593	+				-4.5
1,655,670	+				-0.1
1,655,699	-		Psyr_1468	0.11	+1.5
1,655,706	+		Psyr_1468	0.13	-3.0
1,655,707	-		Psyr_1468	0.13	-1.5
1,655,794	-		Psyr_1468	0.37	+1.7
1,655,795	+		Psyr_1468	0.37	+0.6
1,655,797	+		Psyr_1468	0.38	-0.8
1,655,808	-		Psyr_1468	0.41	+1.1
1,655,808	-		Psyr_1468	0.41	-0.8
1,655,855	+		Psyr_1468	0.54	-0.8
1,655,890	+		Psyr_1468	0.63	-1.8
1,655,890	+		Psyr_1468	0.63	+0.7
1,655,890	+		Psyr_1468	0.63	-2.4
1,655,890	+		Psyr_1468	0.63	-2.1
1,655,890	+		Psyr_1468	0.63	+3.7
1,655,890	+		Psyr_1468	0.63	-0.2
1,655,891	-		Psyr_1468	0.64	+1.0
1,655,891	-		Psyr_1468	0.64	-1.0
1,655,982	-		Psyr_1468	0.89	-0.8
1,655,995	+				+1.1
1,655,995	+				-3.0
1,655,995	+				-1.2
1,655,995	+				-1.3
1,655,995	+				+0.8
1,655,995	+				-0.5
1,655,995	+				+1.5
1,655,996	-				+1.7
1,655,996	-				-0.2
1,655,996	-				+2.2
1,655,996	-				-1.8
1,655,996	-				-2.5
1,655,996	-				-0.3
1,655,998	+				+1.5
1,655,998	+				+0.9
1,655,998	+				-1.7
1,655,998	+				+0.5
1,655,998	+				-2.3
1,655,999	-				-2.7
1,655,999	-				-0.4
1,656,121	+		Psyr_1469	0.12	+0.7
1,656,121	+		Psyr_1469	0.12	-1.1
1,656,123	+		Psyr_1469	0.12	+1.1
1,656,123	+		Psyr_1469	0.12	-0.8
1,656,123	+		Psyr_1469	0.12	+0.2
1,656,123	+		Psyr_1469	0.12	-1.1
1,656,123	+		Psyr_1469	0.12	-2.2
1,656,123	+		Psyr_1469	0.12	+2.3
1,656,123	+		Psyr_1469	0.12	-1.5
1,656,123	+		Psyr_1469	0.12	+1.8
1,656,123	+		Psyr_1469	0.12	-2.4
1,656,123	+		Psyr_1469	0.12	-0.8
1,656,123	+		Psyr_1469	0.12	-0.0
1,656,123	+		Psyr_1469	0.12	+0.1
1,656,124	-		Psyr_1469	0.13	+0.6
1,656,124	-		Psyr_1469	0.13	-2.1
1,656,124	-		Psyr_1469	0.13	+2.2
1,656,124	-		Psyr_1469	0.13	+1.5
1,656,124	-		Psyr_1469	0.13	+1.5
1,656,124	-		Psyr_1469	0.13	+1.1
1,656,124	-		Psyr_1469	0.13	-0.3
1,656,124	-		Psyr_1469	0.13	+2.9
1,656,124	-		Psyr_1469	0.13	+0.3
1,656,124	-		Psyr_1469	0.13	+1.5
1,656,124	-		Psyr_1469	0.13	+0.4
1,656,124	-		Psyr_1469	0.13	-0.5
1,656,124	-		Psyr_1469	0.13	-1.7
1,656,124	-		Psyr_1469	0.13	-2.6
1,656,124	-		Psyr_1469	0.13	+0.0
1,656,124	-		Psyr_1469	0.13	+2.5
1,656,125	+		Psyr_1469	0.13	-1.7
1,656,125	+		Psyr_1469	0.13	+0.5
1,656,125	+		Psyr_1469	0.13	+0.3
1,656,125	+		Psyr_1469	0.13	-1.3
1,656,125	+		Psyr_1469	0.13	+1.0
1,656,125	+		Psyr_1469	0.13	+0.6
1,656,125	+		Psyr_1469	0.13	-0.5
1,656,125	+		Psyr_1469	0.13	-0.1
1,656,125	+		Psyr_1469	0.13	-1.7
1,656,125	+		Psyr_1469	0.13	+0.6
1,656,125	+		Psyr_1469	0.13	-1.1
1,656,125	+		Psyr_1469	0.13	-1.7
1,656,125	+		Psyr_1469	0.13	+0.3
1,656,126	-		Psyr_1469	0.13	-1.8
1,656,126	-		Psyr_1469	0.13	+1.6
1,656,126	-		Psyr_1469	0.13	+0.8
1,656,126	-		Psyr_1469	0.13	-2.0
1,656,126	-		Psyr_1469	0.13	+0.6
1,656,126	-		Psyr_1469	0.13	-0.9
1,656,126	-		Psyr_1469	0.13	+1.0
1,656,126	-		Psyr_1469	0.13	+0.9
1,656,126	-		Psyr_1469	0.13	-1.1
1,656,126	-		Psyr_1469	0.13	-0.1
1,656,126	-		Psyr_1469	0.13	+0.5
1,656,130	-		Psyr_1469	0.14	-0.2
1,656,187	+		Psyr_1469	0.32	-0.8
1,656,188	-		Psyr_1469	0.33	-1.6
1,656,188	-		Psyr_1469	0.33	-1.7
1,656,188	-		Psyr_1469	0.33	-1.3
1,656,296	+		Psyr_1469	0.67	+0.2
1,656,319	+		Psyr_1469	0.74	-2.0
1,656,323	+		Psyr_1469	0.75	+1.3
1,656,323	+		Psyr_1469	0.75	+0.9
1,656,323	+		Psyr_1469	0.75	-2.7
1,656,323	+		Psyr_1469	0.75	-1.3
1,656,323	+		Psyr_1469	0.75	-1.8
1,656,326	+		Psyr_1469	0.76	-2.5
1,656,327	-		Psyr_1469	0.76	+0.8
1,656,383	+				+3.0
1,656,383	+				+0.5
1,656,384	-				-2.4
1,656,387	-				-0.1
1,656,387	-				+0.8
1,656,413	+				-3.3
1,656,414	-				-2.2
1,656,414	-				-0.4
1,656,414	-				+1.5
1,656,415	+				+0.4
1,656,416	-				-1.7
1,656,432	+				-2.2
1,656,458	+				+0.5
1,656,458	+				+0.6
1,656,459	-				-0.1
1,656,459	-				+1.2
1,656,468	-				+0.3
1,656,489	+				-0.1
1,656,489	+				-0.5
1,656,490	-				-1.1
1,656,544	+				+0.7
1,656,545	-				+2.2