Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1442

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,629,397	+				+0.2
1,629,397	+				-3.1
1,629,397	+				+1.0
1,629,398	-				-1.5
1,629,398	-				+0.4
1,629,398	-				-1.1
1,629,398	-				-2.4
1,629,401	+				-2.3
1,629,401	+				-0.5
1,629,596	+		Psyr_1440	0.29	+2.2
1,629,671	+		Psyr_1440	0.40	+0.2
1,629,754	+		Psyr_1440	0.52	-2.0
1,629,754	+		Psyr_1440	0.52	-1.8
1,629,755	-		Psyr_1440	0.52	-0.4
1,629,755	-		Psyr_1440	0.52	-3.5
1,629,851	-		Psyr_1440	0.66	-3.4
1,629,884	-		Psyr_1440	0.71	-0.2
1,629,919	+		Psyr_1440	0.76	+0.4
1,629,935	+		Psyr_1440	0.78	+0.2
1,629,935	+		Psyr_1440	0.78	+0.4
1,629,935	+		Psyr_1440	0.78	-0.2
1,629,935	+		Psyr_1440	0.78	-0.1
1,629,936	-		Psyr_1440	0.79	+1.2
1,629,936	-		Psyr_1440	0.79	-2.3
1,629,989	+		Psyr_1440	0.86	+0.1
1,629,989	+		Psyr_1440	0.86	-0.2
1,629,989	+		Psyr_1440	0.86	+0.1
1,629,990	-		Psyr_1440	0.86	-0.5
1,629,990	-		Psyr_1440	0.86	-2.3
1,630,026	-				+1.1
1,630,233	-		Psyr_1441	0.51	+0.5
1,630,256	+		Psyr_1441	0.59	-2.8
1,630,256	+		Psyr_1441	0.59	-1.4
1,630,256	+		Psyr_1441	0.59	-1.2
1,630,256	+		Psyr_1441	0.59	+0.8
1,630,256	+		Psyr_1441	0.59	-1.5
1,630,256	+		Psyr_1441	0.59	+1.9
1,630,257	-		Psyr_1441	0.59	-2.7
1,630,257	-		Psyr_1441	0.59	-1.7
1,630,257	-		Psyr_1441	0.59	-2.3
1,630,257	-		Psyr_1441	0.59	+1.5
1,630,257	-		Psyr_1441	0.59	+2.1
1,630,257	-		Psyr_1441	0.59	-0.1
1,630,257	-		Psyr_1441	0.59	-0.1
1,630,257	-		Psyr_1441	0.59	+2.4
1,630,326	-		Psyr_1441	0.82	+3.6
1,630,326	-		Psyr_1441	0.82	-1.6
1,630,326	-		Psyr_1441	0.82	-2.4
1,630,326	-		Psyr_1441	0.82	-0.5
1,630,326	-		Psyr_1441	0.82	-1.3
1,630,413	+				+0.7
1,630,413	+				-1.1
1,630,413	+				+0.9
1,630,413	+				+3.3
1,630,413	+				-0.9
1,630,413	+				+1.2
1,630,413	+				-3.0
1,630,414	-				-2.8
1,630,414	-				+3.6
1,630,414	-				+0.9
1,630,414	-				-2.8
1,630,414	-				-0.1
1,630,414	-				+1.6
1,630,414	-				+0.1
1,630,414	-				+0.3
1,630,414	-				+0.2
1,630,414	-				-2.2
1,630,431	+				-0.7
1,630,431	+				-2.8
1,630,512	-				-1.5
1,630,512	-				+0.5
1,630,622	+				+0.3
1,630,622	+				-1.7
1,630,623	-				+1.2
1,630,623	-				-0.2
1,630,623	-				-0.5
1,630,626	+				+1.0
1,630,846	-		Psyr_1442	0.16	-0.1
1,630,850	+		Psyr_1442	0.16	-0.6
1,630,850	+		Psyr_1442	0.16	+4.0
1,630,850	+		Psyr_1442	0.16	+0.2
1,630,851	-		Psyr_1442	0.16	-2.3
1,630,851	-		Psyr_1442	0.16	-0.4
1,630,851	-		Psyr_1442	0.16	+1.3
1,630,875	+		Psyr_1442	0.17	-1.4
1,630,875	+		Psyr_1442	0.17	-0.1
1,630,922	+		Psyr_1442	0.18	-0.8
1,630,922	+		Psyr_1442	0.18	-1.0
1,630,922	+		Psyr_1442	0.18	+0.2
1,630,923	-		Psyr_1442	0.18	-1.1
1,630,923	-		Psyr_1442	0.18	-0.9
1,630,923	-		Psyr_1442	0.18	+1.3
1,630,923	-		Psyr_1442	0.18	-1.1
1,630,923	-		Psyr_1442	0.18	-1.5
1,630,939	+		Psyr_1442	0.19	+0.4
1,630,939	+		Psyr_1442	0.19	+2.5
1,630,940	-		Psyr_1442	0.19	+0.0
1,630,970	+		Psyr_1442	0.20	-1.3
1,630,970	+		Psyr_1442	0.20	-1.0
1,630,970	+		Psyr_1442	0.20	+1.2
1,630,971	-		Psyr_1442	0.20	+0.5
1,630,971	-		Psyr_1442	0.20	+2.2
1,630,971	-		Psyr_1442	0.20	-2.9
1,630,971	-		Psyr_1442	0.20	+0.8
1,630,971	-		Psyr_1442	0.20	+1.0
1,630,971	-		Psyr_1442	0.20	-2.2
1,630,994	+		Psyr_1442	0.21	-1.7
1,630,995	-		Psyr_1442	0.21	-1.5
1,631,009	+		Psyr_1442	0.21	-0.4
1,631,009	+		Psyr_1442	0.21	+3.6
1,631,009	+		Psyr_1442	0.21	-0.9
1,631,009	+		Psyr_1442	0.21	+0.5
1,631,010	-		Psyr_1442	0.21	-1.3
1,631,010	-		Psyr_1442	0.21	+0.2
1,631,010	-		Psyr_1442	0.21	-1.7
1,631,010	-		Psyr_1442	0.21	-1.5
1,631,055	+		Psyr_1442	0.23	-2.3
1,631,260	+		Psyr_1442	0.29	+0.3
1,631,260	+		Psyr_1442	0.29	+0.7
1,631,330	-		Psyr_1442	0.32	+0.9
1,631,410	+		Psyr_1442	0.34	+0.2
1,631,410	+		Psyr_1442	0.34	+1.6
1,631,410	+		Psyr_1442	0.34	-0.8
1,631,411	-		Psyr_1442	0.34	+6.0
1,631,411	-		Psyr_1442	0.34	+0.5
1,631,411	-		Psyr_1442	0.34	-3.0
1,631,453	-		Psyr_1442	0.36	-0.8
1,631,603	+		Psyr_1442	0.41	-1.4
1,631,649	+		Psyr_1442	0.42	-1.3
1,631,649	+		Psyr_1442	0.42	-2.5
1,631,650	-		Psyr_1442	0.42	-0.5
1,631,650	-		Psyr_1442	0.42	-2.1
1,631,749	+		Psyr_1442	0.46	-0.8
1,631,837	+		Psyr_1442	0.49	-2.7
1,631,838	-		Psyr_1442	0.49	+0.9
1,631,894	+		Psyr_1442	0.50	-2.2
1,631,895	-		Psyr_1442	0.51	-1.7
1,631,929	+		Psyr_1442	0.52	-1.7
1,632,014	+		Psyr_1442	0.54	-2.3
1,632,014	+		Psyr_1442	0.54	-0.4
1,632,094	+		Psyr_1442	0.57	-0.1
1,632,094	+		Psyr_1442	0.57	-1.1
1,632,094	+		Psyr_1442	0.57	-2.2
1,632,094	+		Psyr_1442	0.57	+0.4
1,632,243	+		Psyr_1442	0.62	-2.1
1,632,244	-		Psyr_1442	0.62	-1.3
1,632,244	-		Psyr_1442	0.62	-3.4
1,632,329	+		Psyr_1442	0.65	-0.6
1,632,329	+		Psyr_1442	0.65	-0.1
1,632,329	+		Psyr_1442	0.65	-1.8
1,632,783	-		Psyr_1442	0.80	-1.1
1,632,783	-		Psyr_1442	0.80	-0.8
1,632,783	-		Psyr_1442	0.80	+0.7
1,632,808	-		Psyr_1442	0.81	-1.7
1,632,824	+		Psyr_1442	0.81	-2.0
1,632,824	+		Psyr_1442	0.81	+0.6
1,632,824	+		Psyr_1442	0.81	-0.7
1,632,824	+		Psyr_1442	0.81	+1.5
1,632,824	+		Psyr_1442	0.81	+2.9
1,632,825	-		Psyr_1442	0.81	+1.4
1,632,825	-		Psyr_1442	0.81	+0.1
1,632,846	-		Psyr_1442	0.82	-2.0
1,632,846	-		Psyr_1442	0.82	-2.8
1,632,846	-		Psyr_1442	0.82	-1.5
1,632,846	-		Psyr_1442	0.82	-0.7
1,633,062	-		Psyr_1442	0.89	-0.5
1,633,107	-				-3.5
1,633,107	-				+1.2
1,633,107	-				+0.6
1,633,107	-				+0.1
1,633,321	+				-1.1
1,633,321	+				+1.2
1,633,322	-				+1.1
1,633,322	-				-0.1
1,633,322	-				+2.4
1,633,323	+				+0.5
1,633,335	+				-2.0
1,633,335	+				+1.2
1,633,336	-				+0.2
1,633,418	-				+2.3
1,633,501	+		Psyr_1443	0.26	-2.2
1,633,501	+		Psyr_1443	0.26	-1.3
1,633,501	+		Psyr_1443	0.26	+2.5
1,633,501	+		Psyr_1443	0.26	+1.0
1,633,501	+		Psyr_1443	0.26	+3.1
1,633,501	+		Psyr_1443	0.26	+0.8
1,633,501	+		Psyr_1443	0.26	+1.5
1,633,501	+		Psyr_1443	0.26	+1.9
1,633,501	+		Psyr_1443	0.26	+0.7
1,633,501	+		Psyr_1443	0.26	-3.1
1,633,501	+		Psyr_1443	0.26	+0.2
1,633,501	+		Psyr_1443	0.26	-0.7
1,633,501	+		Psyr_1443	0.26	-0.5
1,633,501	+		Psyr_1443	0.26	-0.5
1,633,502	-		Psyr_1443	0.26	+2.7
1,633,502	-		Psyr_1443	0.26	-0.9
1,633,502	-		Psyr_1443	0.26	-1.7
1,633,502	-		Psyr_1443	0.26	-2.0
1,633,502	-		Psyr_1443	0.26	+0.5
1,633,502	-		Psyr_1443	0.26	-0.3
1,633,502	-		Psyr_1443	0.26	+0.3
1,633,502	-		Psyr_1443	0.26	+1.0
1,633,502	-		Psyr_1443	0.26	-0.4
1,633,502	-		Psyr_1443	0.26	-2.6
1,633,502	-		Psyr_1443	0.26	-1.1
1,633,502	-		Psyr_1443	0.26	+0.1
1,633,543	+		Psyr_1443	0.35	+0.2
1,633,543	+		Psyr_1443	0.35	-2.9
1,633,544	-		Psyr_1443	0.35	+1.3
1,633,783	+		Psyr_1443	0.88	-1.7
1,633,783	+		Psyr_1443	0.88	-2.3
1,633,784	-		Psyr_1443	0.88	-3.0
1,633,784	-		Psyr_1443	0.88	+0.7
1,633,784	-		Psyr_1443	0.88	-0.1
1,633,856	+				-1.5
1,633,856	+				+1.2
1,633,856	+				+0.8
1,633,857	-				+0.7
1,633,857	-				+0.9
1,633,857	-				-0.3
1,633,857	-				-0.2
1,633,883	+				-0.7
1,633,940	+				-0.8
1,633,940	+				+1.7
1,633,940	+				-0.1
1,633,940	+				+1.4
1,633,940	+				-2.3
1,633,940	+				-2.3
1,633,941	-				-0.3
1,633,941	-				+1.2
1,633,941	-				-1.1
1,633,941	-				+1.1
1,633,941	-				+0.2
1,633,941	-				+2.3
1,634,078	+		Psyr_1444	0.18	-0.2
1,634,078	+		Psyr_1444	0.18	+0.8
1,634,078	+		Psyr_1444	0.18	-2.4
1,634,078	+		Psyr_1444	0.18	-3.3
1,634,078	+		Psyr_1444	0.18	-0.1
1,634,078	+		Psyr_1444	0.18	+0.8
1,634,078	+		Psyr_1444	0.18	+1.5
1,634,078	+		Psyr_1444	0.18	+0.4
1,634,078	+		Psyr_1444	0.18	+1.5
1,634,078	+		Psyr_1444	0.18	+2.5
1,634,078	+		Psyr_1444	0.18	+2.2
1,634,078	+		Psyr_1444	0.18	-1.1
1,634,078	+		Psyr_1444	0.18	-2.4
1,634,159	+		Psyr_1444	0.23	+0.9
1,634,159	+		Psyr_1444	0.23	-0.5
1,634,159	+		Psyr_1444	0.23	-2.9
1,634,159	+		Psyr_1444	0.23	+1.1
1,634,160	-		Psyr_1444	0.23	+1.6
1,634,160	-		Psyr_1444	0.23	+0.4
1,634,160	-		Psyr_1444	0.23	-3.2
1,634,160	-		Psyr_1444	0.23	-0.5
1,634,160	-		Psyr_1444	0.23	-1.8
1,634,160	-		Psyr_1444	0.23	-1.1
1,634,194	-		Psyr_1444	0.25	-0.1
1,634,208	-		Psyr_1444	0.26	-0.8
1,634,332	-		Psyr_1444	0.35	+1.1