Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1361

Experiment: epiphytic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1360 and Psyr_1361 are separated by 263 nucleotidesPsyr_1361 and Psyr_1362 are separated by 14 nucleotidesPsyr_1362 and Psyr_1363 are separated by 138 nucleotides Psyr_1360: Psyr_1360 - PP-loop, at 1,542,753 to 1,544,090 _1360 Psyr_1361: Psyr_1361 - CTP synthase, at 1,544,354 to 1,545,985 _1361 Psyr_1362: Psyr_1362 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,546,000 to 1,546,845 _1362 Psyr_1363: Psyr_1363 - enolase, at 1,546,984 to 1,548,270 _1363 Position (kb) 1544 1545 1546Strain fitness (log2 ratio) -1 0 1at 1544.183 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
remove
1,544,183 + +1.1

Or see this region's nucleotide sequence