Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1348

Experiment: epiphytic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1346 and Psyr_1347 are separated by 16 nucleotidesPsyr_1347 and Psyr_1348 overlap by 1 nucleotidesPsyr_1348 and Psyr_1349 overlap by 4 nucleotides Psyr_1346: Psyr_1346 - ribosome recycling factor, at 1,525,960 to 1,526,517 _1346 Psyr_1347: Psyr_1347 - Undecaprenyl pyrophosphate synthetase, at 1,526,534 to 1,527,289 _1347 Psyr_1348: Psyr_1348 - Phosphatidate cytidylyltransferase, at 1,527,289 to 1,528,104 _1348 Psyr_1349: Psyr_1349 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,528,101 to 1,529,291 _1349 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -1 0 1 2at 1526.515 kb on + strandat 1527.267 kb on + strandat 1527.267 kb on + strandat 1527.267 kb on + strandat 1527.267 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
remove
1,526,515 + +0.7
1,527,267 + -0.5
1,527,267 + +2.6
1,527,267 + +0.8
1,527,267 + +0.6

Or see this region's nucleotide sequence