Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0935

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,069,015	-		Psyr_0934	0.31	-2.1
1,069,032	+		Psyr_0934	0.32	+0.6
1,069,043	+		Psyr_0934	0.33	+0.5
1,069,062	-		Psyr_0934	0.35	-0.4
1,069,062	-		Psyr_0934	0.35	+0.7
1,069,189	+		Psyr_0934	0.44	+2.5
1,069,331	+		Psyr_0934	0.55	-1.5
1,069,331	+		Psyr_0934	0.55	+0.8
1,069,331	+		Psyr_0934	0.55	+1.6
1,069,331	+		Psyr_0934	0.55	+1.0
1,069,332	-		Psyr_0934	0.55	-0.8
1,069,332	-		Psyr_0934	0.55	-2.6
1,069,332	-		Psyr_0934	0.55	-0.0
1,069,403	+		Psyr_0934	0.60	+1.7
1,069,403	+		Psyr_0934	0.60	-0.4
1,069,403	+		Psyr_0934	0.60	+2.1
1,069,403	+		Psyr_0934	0.60	-0.6
1,069,403	+		Psyr_0934	0.60	+1.1
1,069,403	+		Psyr_0934	0.60	+0.5
1,069,404	-		Psyr_0934	0.60	-3.2
1,069,404	-		Psyr_0934	0.60	-1.6
1,069,404	-		Psyr_0934	0.60	-1.2
1,069,412	+		Psyr_0934	0.61	+0.9
1,069,412	+		Psyr_0934	0.61	+2.5
1,069,412	+		Psyr_0934	0.61	-0.3
1,069,412	+		Psyr_0934	0.61	+1.4
1,069,413	-		Psyr_0934	0.61	-1.6
1,069,413	-		Psyr_0934	0.61	-2.5
1,069,413	-		Psyr_0934	0.61	+0.3
1,069,413	-		Psyr_0934	0.61	+1.3
1,069,424	+		Psyr_0934	0.62	+0.5
1,069,446	+		Psyr_0934	0.64	-2.4
1,069,505	+		Psyr_0934	0.68	-1.1
1,069,524	+		Psyr_0934	0.70	+1.3
1,069,525	-		Psyr_0934	0.70	+0.5
1,069,681	-		Psyr_0934	0.81	-2.6
1,069,713	+		Psyr_0934	0.84	+0.8
1,069,714	-		Psyr_0934	0.84	+1.1
1,069,754	-		Psyr_0934	0.87	-0.3
1,069,754	-		Psyr_0934	0.87	-2.4
1,069,756	+		Psyr_0934	0.87	-0.5
1,069,756	+		Psyr_0934	0.87	-2.8
1,069,757	-		Psyr_0934	0.87	+1.0
1,069,769	+		Psyr_0934	0.88	+0.2
1,069,873	+				-1.4
1,069,873	+				+3.1
1,069,898	+				+0.9
1,069,898	+				+1.0
1,069,898	+				-0.6
1,069,898	+				-1.5
1,069,898	+				+2.1
1,069,898	+				+0.6
1,069,898	+				-0.9
1,069,898	+				+0.9
1,069,898	+				-3.8
1,069,898	+				+0.1
1,069,899	-				-1.6
1,069,899	-				-0.5
1,069,899	-				+2.2
1,069,899	-				-0.7
1,069,899	-				-0.2
1,069,899	-				+1.1
1,070,034	+				+1.5
1,070,034	+				+0.8
1,070,035	-				-0.6
1,070,100	+		Psyr_0935	0.13	+0.4
1,070,101	-		Psyr_0935	0.13	+0.3
1,070,164	+		Psyr_0935	0.17	-1.1
1,070,164	+		Psyr_0935	0.17	+0.2
1,070,164	+		Psyr_0935	0.17	-0.4
1,070,165	-		Psyr_0935	0.17	-0.7
1,070,165	-		Psyr_0935	0.17	-0.3
1,070,181	+		Psyr_0935	0.18	+0.3
1,070,181	+		Psyr_0935	0.18	-1.2
1,070,182	-		Psyr_0935	0.18	-2.8
1,070,182	-		Psyr_0935	0.18	+0.2
1,070,182	-		Psyr_0935	0.18	+0.7
1,070,223	+		Psyr_0935	0.21	+2.6
1,070,223	+		Psyr_0935	0.21	+0.9
1,070,223	+		Psyr_0935	0.21	-0.5
1,070,223	+		Psyr_0935	0.21	+1.6
1,070,223	+		Psyr_0935	0.21	+2.1
1,070,223	+		Psyr_0935	0.21	+1.5
1,070,223	+		Psyr_0935	0.21	+2.5
1,070,223	+		Psyr_0935	0.21	+0.5
1,070,224	-		Psyr_0935	0.21	-1.6
1,070,224	-		Psyr_0935	0.21	+0.4
1,070,224	-		Psyr_0935	0.21	+1.3
1,070,224	-		Psyr_0935	0.21	-0.1
1,070,224	-		Psyr_0935	0.21	-0.1
1,070,224	-		Psyr_0935	0.21	+1.9
1,070,224	-		Psyr_0935	0.21	-0.1
1,070,224	-		Psyr_0935	0.21	-2.4
1,070,224	-		Psyr_0935	0.21	+0.1
1,070,224	-		Psyr_0935	0.21	-0.7
1,070,224	-		Psyr_0935	0.21	+2.8
1,070,225	+		Psyr_0935	0.21	+0.7
1,070,226	-		Psyr_0935	0.21	+0.0
1,070,265	+		Psyr_0935	0.24	+0.4
1,070,265	+		Psyr_0935	0.24	+1.5
1,070,265	+		Psyr_0935	0.24	-2.9
1,070,266	-		Psyr_0935	0.24	+0.0
1,070,266	-		Psyr_0935	0.24	+1.9
1,070,266	-		Psyr_0935	0.24	-1.9
1,070,289	+		Psyr_0935	0.26	+0.6
1,070,377	-		Psyr_0935	0.32	-0.1
1,070,469	+		Psyr_0935	0.39	-0.3
1,070,470	-		Psyr_0935	0.39	-2.8
1,070,470	-		Psyr_0935	0.39	+0.7
1,070,752	+		Psyr_0935	0.59	-2.3
1,070,753	-		Psyr_0935	0.59	+2.9
1,070,753	-		Psyr_0935	0.59	-0.0
1,070,856	+		Psyr_0935	0.66	-0.1
1,070,856	+		Psyr_0935	0.66	-1.6
1,070,856	+		Psyr_0935	0.66	+2.5
1,070,856	+		Psyr_0935	0.66	-0.1
1,070,856	+		Psyr_0935	0.66	-2.2
1,070,856	+		Psyr_0935	0.66	+3.1
1,070,856	+		Psyr_0935	0.66	+0.1
1,070,856	+		Psyr_0935	0.66	+0.6
1,070,856	+		Psyr_0935	0.66	-2.2
1,070,856	+		Psyr_0935	0.66	+3.3
1,070,856	+		Psyr_0935	0.66	-2.2
1,070,856	+		Psyr_0935	0.66	+0.4
1,070,856	+		Psyr_0935	0.66	-1.6
1,070,856	+		Psyr_0935	0.66	+0.5
1,070,856	+		Psyr_0935	0.66	-0.1
1,070,856	+		Psyr_0935	0.66	+0.8
1,070,856	+		Psyr_0935	0.66	-0.6
1,070,857	-		Psyr_0935	0.66	+0.5
1,070,857	-		Psyr_0935	0.66	-2.3
1,070,857	-		Psyr_0935	0.66	+0.1
1,070,857	-		Psyr_0935	0.66	+2.1
1,070,857	-		Psyr_0935	0.66	+0.2
1,070,857	-		Psyr_0935	0.66	-1.8
1,070,857	-		Psyr_0935	0.66	-2.8
1,070,857	-		Psyr_0935	0.66	-1.5
1,070,857	-		Psyr_0935	0.66	-0.6
1,070,857	-		Psyr_0935	0.66	+3.5
1,070,857	-		Psyr_0935	0.66	-0.2
1,070,857	-		Psyr_0935	0.66	+3.4
1,070,857	-		Psyr_0935	0.66	-0.7
1,070,857	-		Psyr_0935	0.66	+1.2
1,070,857	-		Psyr_0935	0.66	-0.0
1,070,857	-		Psyr_0935	0.66	-1.5
1,070,857	-		Psyr_0935	0.66	-3.1
1,070,857	-		Psyr_0935	0.66	-3.3
1,070,857	-		Psyr_0935	0.66	+0.1
1,070,857	-		Psyr_0935	0.66	-2.8
1,070,857	-		Psyr_0935	0.66	+1.9
1,070,890	-		Psyr_0935	0.69	-0.1
1,070,890	-		Psyr_0935	0.69	-0.3
1,070,890	-		Psyr_0935	0.69	-0.1
1,070,928	+		Psyr_0935	0.71	+2.8
1,070,928	+		Psyr_0935	0.71	-2.9
1,070,928	+		Psyr_0935	0.71	+1.6
1,070,928	+		Psyr_0935	0.71	+0.9
1,070,929	-		Psyr_0935	0.71	+0.7
1,071,004	-		Psyr_0935	0.77	+0.3
1,071,078	-		Psyr_0935	0.82	+1.5
1,071,102	+		Psyr_0935	0.84	+1.3
1,071,400	+				-2.7
1,071,401	-				-0.5
1,071,401	-				+0.4
1,071,401	-				-0.1
1,071,404	+				-2.9
1,071,655	+		Psyr_0936	0.25	-1.7
1,071,707	+		Psyr_0936	0.29	-1.6
1,071,707	+		Psyr_0936	0.29	-1.5
1,071,707	+		Psyr_0936	0.29	-1.2
1,071,707	+		Psyr_0936	0.29	-3.6
1,071,707	+		Psyr_0936	0.29	-0.1
1,071,707	+		Psyr_0936	0.29	-1.6
1,071,708	-		Psyr_0936	0.29	+0.0
1,071,708	-		Psyr_0936	0.29	+0.4
1,071,708	-		Psyr_0936	0.29	-2.6
1,071,722	-		Psyr_0936	0.30	-0.2
1,071,831	+		Psyr_0936	0.40	+1.5
1,071,900	+		Psyr_0936	0.46	-2.8
1,071,900	+		Psyr_0936	0.46	-2.4
1,071,900	+		Psyr_0936	0.46	-2.5
1,071,901	-		Psyr_0936	0.46	+1.3
1,071,904	-		Psyr_0936	0.46	-2.8
1,071,931	+		Psyr_0936	0.49	-0.5
1,071,931	+		Psyr_0936	0.49	-2.2
1,071,931	+		Psyr_0936	0.49	-1.7
1,071,931	+		Psyr_0936	0.49	-2.3
1,071,932	-		Psyr_0936	0.49	-2.9
1,071,932	-		Psyr_0936	0.49	+1.3
1,071,932	-		Psyr_0936	0.49	-1.5
1,071,932	-		Psyr_0936	0.49	-1.2
1,071,932	-		Psyr_0936	0.49	-1.6
1,071,932	-		Psyr_0936	0.49	-1.4
1,071,932	-		Psyr_0936	0.49	-2.9
1,071,979	+		Psyr_0936	0.53	+0.1
1,071,979	+		Psyr_0936	0.53	-0.8
1,072,040	+		Psyr_0936	0.58	+1.5
1,072,094	+		Psyr_0936	0.63	-0.1
1,072,095	-		Psyr_0936	0.63	-3.1
1,072,095	-		Psyr_0936	0.63	+0.9
1,072,158	+		Psyr_0936	0.68	-2.6
1,072,158	+		Psyr_0936	0.68	-2.5
1,072,158	+		Psyr_0936	0.68	-2.8
1,072,158	+		Psyr_0936	0.68	-3.5
1,072,159	-		Psyr_0936	0.68	-1.9
1,072,159	-		Psyr_0936	0.68	+2.5
1,072,159	-		Psyr_0936	0.68	-1.3
1,072,197	+		Psyr_0936	0.72	-1.6
1,072,198	-		Psyr_0936	0.72	-1.3
1,072,198	-		Psyr_0936	0.72	-0.8
1,072,288	-		Psyr_0936	0.80	-0.8
1,072,313	+		Psyr_0936	0.82	-4.6
1,072,314	-		Psyr_0936	0.82	-2.1