Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0872

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0871 and Psyr_0872 are separated by 88 nucleotidesPsyr_0872 and Psyr_0873 overlap by 4 nucleotidesPsyr_0873 and Psyr_0874 are separated by 201 nucleotides Psyr_0871: Psyr_0871 - PAS, at 992,870 to 994,183 _0871 Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843 _0872 Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403 _0873 Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012 _0874 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 993.361 kb on - strand, within Psyr_0871at 993.361 kb on - strand, within Psyr_0871at 993.399 kb on - strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.569 kb on + strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.570 kb on - strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.602 kb on + strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.603 kb on - strand, within Psyr_0871at 993.836 kb on - strand, within Psyr_0871at 994.219 kb on - strandat 994.411 kb on + strandat 994.666 kb on + strand, within Psyr_0872at 994.666 kb on + strand, within Psyr_0872at 994.667 kb on - strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.976 kb on - strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 995.032 kb on + strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.283 kb on + strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.366 kb on - strand, within Psyr_0872at 995.491 kb on + strand, within Psyr_0872at 995.517 kb on + strand, within Psyr_0872at 995.517 kb on + strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.784 kb on + strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.808 kb on - strandat 995.865 kb on + strandat 995.936 kb on - strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 996.075 kb on + strand, within Psyr_0873at 996.076 kb on - strand, within Psyr_0873at 996.407 kb on + strandat 996.408 kb on - strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.498 kb on - strandat 996.503 kb on + strandat 996.504 kb on - strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.525 kb on + strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.526 kb on - strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.537 kb on - strandat 996.537 kb on - strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.582 kb on + strandat 996.625 kb on + strandat 996.625 kb on + strandat 996.626 kb on - strandat 996.702 kb on + strand, within Psyr_0874at 996.702 kb on + strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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993,361 - Psyr_0871 0.37 -1.7
993,361 - Psyr_0871 0.37 +0.3
993,399 - Psyr_0871 0.40 +0.1
993,569 + Psyr_0871 0.53 -1.5
993,569 + Psyr_0871 0.53 +2.5
993,569 + Psyr_0871 0.53 -1.3
993,569 + Psyr_0871 0.53 -1.3
993,569 + Psyr_0871 0.53 -1.0
993,569 + Psyr_0871 0.53 +2.8
993,569 + Psyr_0871 0.53 -0.9
993,570 - Psyr_0871 0.53 -0.4
993,570 - Psyr_0871 0.53 +2.1
993,570 - Psyr_0871 0.53 -0.6
993,570 - Psyr_0871 0.53 -1.7
993,570 - Psyr_0871 0.53 -1.3
993,570 - Psyr_0871 0.53 -1.0
993,570 - Psyr_0871 0.53 -2.5
993,602 + Psyr_0871 0.56 -1.3
993,602 + Psyr_0871 0.56 -2.5
993,602 + Psyr_0871 0.56 -1.1
993,602 + Psyr_0871 0.56 +1.3
993,603 - Psyr_0871 0.56 +0.4
993,603 - Psyr_0871 0.56 -2.4
993,603 - Psyr_0871 0.56 -1.3
993,836 - Psyr_0871 0.74 +1.3
994,219 - +1.3
994,411 + -0.2
994,666 + Psyr_0872 0.25 +3.5
994,666 + Psyr_0872 0.25 +0.2
994,667 - Psyr_0872 0.25 +0.7
994,975 + Psyr_0872 0.45 -1.9
994,975 + Psyr_0872 0.45 -0.4
994,976 - Psyr_0872 0.45 +1.9
994,979 + Psyr_0872 0.45 -2.1
995,032 + Psyr_0872 0.48 -1.6
995,198 - Psyr_0872 0.59 -1.7
995,283 + Psyr_0872 0.64 -0.3
995,284 - Psyr_0872 0.64 -1.7
995,284 - Psyr_0872 0.64 +1.5
995,296 + Psyr_0872 0.65 -3.4
995,296 + Psyr_0872 0.65 -1.9
995,296 + Psyr_0872 0.65 +0.0
995,296 + Psyr_0872 0.65 +0.3
995,296 + Psyr_0872 0.65 +1.9
995,296 + Psyr_0872 0.65 +1.5
995,296 + Psyr_0872 0.65 +0.9
995,296 + Psyr_0872 0.65 -0.5
995,296 + Psyr_0872 0.65 -2.0
995,296 + Psyr_0872 0.65 +1.5
995,297 - Psyr_0872 0.65 -0.1
995,297 - Psyr_0872 0.65 +4.0
995,297 - Psyr_0872 0.65 -0.2
995,297 - Psyr_0872 0.65 +1.8
995,297 - Psyr_0872 0.65 -2.7
995,297 - Psyr_0872 0.65 -2.1
995,302 + Psyr_0872 0.66 -1.8
995,302 + Psyr_0872 0.66 +0.2
995,302 + Psyr_0872 0.66 -0.9
995,302 + Psyr_0872 0.66 -2.1
995,303 - Psyr_0872 0.66 -0.5
995,303 - Psyr_0872 0.66 +0.6
995,303 - Psyr_0872 0.66 +0.5
995,303 - Psyr_0872 0.66 -0.5
995,303 - Psyr_0872 0.66 +2.0
995,303 - Psyr_0872 0.66 +1.0
995,303 - Psyr_0872 0.66 -0.9
995,303 - Psyr_0872 0.66 +2.6
995,303 - Psyr_0872 0.66 +1.5
995,303 - Psyr_0872 0.66 +0.5
995,366 - Psyr_0872 0.70 -0.8
995,491 + Psyr_0872 0.78 +0.3
995,517 + Psyr_0872 0.79 +1.1
995,517 + Psyr_0872 0.79 +1.3
995,578 - Psyr_0872 0.83 +0.2
995,578 - Psyr_0872 0.83 +0.3
995,784 + +1.0
995,785 - -2.0
995,785 - +1.0
995,785 - +1.8
995,785 - +2.2
995,785 - +2.0
995,808 - -0.3
995,865 + -0.2
995,936 - Psyr_0873 0.17 -2.4
995,946 + Psyr_0873 0.19 +1.7
995,946 + Psyr_0873 0.19 -0.5
995,947 - Psyr_0873 0.19 -1.2
995,947 - Psyr_0873 0.19 -2.4
995,947 - Psyr_0873 0.19 +1.1
995,947 - Psyr_0873 0.19 -1.4
995,947 - Psyr_0873 0.19 -3.4
996,075 + Psyr_0873 0.42 -2.1
996,076 - Psyr_0873 0.42 +2.2
996,407 + +3.0
996,408 - +1.6
996,481 + +0.1
996,481 + +2.9
996,481 + -0.3
996,482 - +3.5
996,482 - +0.6
996,482 - -1.3
996,497 + -0.6
996,497 + +1.5
996,497 + +0.2
996,497 + +1.0
996,497 + -2.4
996,497 + -0.3
996,498 - +0.0
996,503 + +0.3
996,504 - -0.5
996,514 + -0.1
996,514 + +2.9
996,514 + +2.2
996,514 + +0.6
996,514 + +2.1
996,514 + -0.1
996,514 + -0.3
996,515 - +2.2
996,515 - +1.6
996,515 - -2.4
996,515 - -0.7
996,515 - -1.8
996,515 - -0.1
996,525 + -1.3
996,526 - +0.4
996,526 - -2.0
996,526 - +0.5
996,526 - -0.7
996,526 - +0.5
996,536 + +1.3
996,536 + +0.4
996,536 + +1.7
996,537 - -2.8
996,537 - -2.7
996,567 + -2.1
996,567 + +1.3
996,568 - +2.3
996,568 - +1.0
996,582 + -0.5
996,625 + +0.2
996,625 + -1.7
996,626 - +1.0
996,702 + Psyr_0874 0.24 -3.6
996,702 + Psyr_0874 0.24 -1.1
996,819 + Psyr_0874 0.52 +0.5
996,819 + Psyr_0874 0.52 +1.1
996,820 - Psyr_0874 0.53 -0.3
996,820 - Psyr_0874 0.53 -0.1
996,820 - Psyr_0874 0.53 -0.5

Or see this region's nucleotide sequence