Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0823 and Psyr_0824 are separated by 39 nucleotides Psyr_0824 and Psyr_0825 are separated by 107 nucleotides
Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348
_0823
Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566
_0824
Psyr_0825: Psyr_0825 - conserved hypothetical protein, at 933,674 to 934,540
_0825
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 931.743 kb on + strand, within Psyr_0823 at 931.743 kb on + strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.927 kb on - strand, within Psyr_0823 at 931.927 kb on - strand, within Psyr_0823 at 931.958 kb on + strand, within Psyr_0823 at 932.163 kb on + strand, within Psyr_0823 at 932.163 kb on + strand, within Psyr_0823 at 932.164 kb on - strand, within Psyr_0823 at 932.245 kb on - strand at 932.289 kb on + strand at 932.289 kb on + strand at 932.290 kb on - strand at 932.290 kb on - strand at 932.389 kb on + strand at 932.778 kb on - strand, within Psyr_0824 at 932.784 kb on - strand, within Psyr_0824 at 933.065 kb on - strand, within Psyr_0824 at 933.104 kb on - strand, within Psyr_0824 at 933.104 kb on - strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.585 kb on + strand at 933.610 kb on + strand at 933.745 kb on + strand at 933.745 kb on + strand at 933.950 kb on + strand, within Psyr_0825 at 933.950 kb on + strand, within Psyr_0825 at 933.951 kb on - strand, within Psyr_0825 at 933.951 kb on - strand, within Psyr_0825 at 933.951 kb on - strand, within Psyr_0825 at 933.951 kb on - strand, within Psyr_0825 at 933.964 kb on - strand, within Psyr_0825 at 934.038 kb on + strand, within Psyr_0825 at 934.039 kb on - strand, within Psyr_0825 at 934.039 kb on - strand, within Psyr_0825 at 934.039 kb on - strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.042 kb on - strand, within Psyr_0825 at 934.081 kb on - strand, within Psyr_0825 at 934.119 kb on - strand, within Psyr_0825 at 934.119 kb on - strand, within Psyr_0825 at 934.158 kb on + strand, within Psyr_0825 at 934.158 kb on + strand, within Psyr_0825 at 934.241 kb on - strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.249 kb on - strand, within Psyr_0825 at 934.249 kb on - strand, within Psyr_0825
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 931,743 + Psyr_0823 0.65 +1.4 931,743 + Psyr_0823 0.65 -0.3 931,744 - Psyr_0823 0.65 -0.1 931,744 - Psyr_0823 0.65 +3.0 931,744 - Psyr_0823 0.65 -2.5 931,744 - Psyr_0823 0.65 -0.6 931,744 - Psyr_0823 0.65 -0.8 931,744 - Psyr_0823 0.65 +0.3 931,744 - Psyr_0823 0.65 +0.6 931,744 - Psyr_0823 0.65 -1.6 931,744 - Psyr_0823 0.65 +1.5 931,744 - Psyr_0823 0.65 +0.2 931,744 - Psyr_0823 0.65 +1.0 931,744 - Psyr_0823 0.65 +1.6 931,744 - Psyr_0823 0.65 -0.6 931,927 - Psyr_0823 0.76 -1.9 931,927 - Psyr_0823 0.76 -0.1 931,958 + Psyr_0823 0.78 -0.5 932,163 + Psyr_0823 0.89 +1.0 932,163 + Psyr_0823 0.89 +1.8 932,164 - Psyr_0823 0.89 +0.7 932,245 - -0.1 932,289 + -1.1 932,289 + -3.0 932,290 - -0.6 932,290 - -0.3 932,389 + +0.6 932,778 - Psyr_0824 0.33 +3.2 932,784 - Psyr_0824 0.34 -2.4 933,065 - Psyr_0824 0.57 +1.4 933,104 - Psyr_0824 0.61 +1.3 933,104 - Psyr_0824 0.61 +1.6 933,199 + Psyr_0824 0.69 +1.7 933,199 + Psyr_0824 0.69 +0.1 933,199 + Psyr_0824 0.69 +1.8 933,200 - Psyr_0824 0.69 -0.8 933,200 - Psyr_0824 0.69 +1.7 933,200 - Psyr_0824 0.69 +1.9 933,585 + +2.2 933,610 + -0.6 933,745 + -1.4 933,745 + +1.2 933,950 + Psyr_0825 0.32 +0.4 933,950 + Psyr_0825 0.32 -1.9 933,951 - Psyr_0825 0.32 -2.6 933,951 - Psyr_0825 0.32 -1.9 933,951 - Psyr_0825 0.32 -0.6 933,951 - Psyr_0825 0.32 -1.7 933,964 - Psyr_0825 0.33 -2.7 934,038 + Psyr_0825 0.42 +0.1 934,039 - Psyr_0825 0.42 -0.5 934,039 - Psyr_0825 0.42 +1.7 934,039 - Psyr_0825 0.42 -0.9 934,041 + Psyr_0825 0.42 +1.0 934,041 + Psyr_0825 0.42 -0.3 934,042 - Psyr_0825 0.42 +2.5 934,081 - Psyr_0825 0.47 +1.7 934,119 - Psyr_0825 0.51 -0.6 934,119 - Psyr_0825 0.51 +1.3 934,158 + Psyr_0825 0.56 -3.4 934,158 + Psyr_0825 0.56 -0.0 934,241 - Psyr_0825 0.65 +1.5 934,248 + Psyr_0825 0.66 -0.7 934,249 - Psyr_0825 0.66 -2.9 934,249 - Psyr_0825 0.66 +1.4
Or see this region's nucleotide sequence