Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0771 and Psyr_0772 are separated by 12 nucleotides Psyr_0772 and Psyr_0773 overlap by 4 nucleotides
Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741
_0771
Psyr_0772: Psyr_0772 - Protein of unknown function DUF1355, at 876,754 to 877,509
_0772
Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621
_0773
Position (kb) 876
877
878 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 875.785 kb on - strand, within Psyr_0771 at 875.789 kb on + strand, within Psyr_0771 at 875.789 kb on + strand, within Psyr_0771 at 875.789 kb on + strand, within Psyr_0771 at 875.790 kb on - strand, within Psyr_0771 at 875.884 kb on - strand, within Psyr_0771 at 876.042 kb on + strand, within Psyr_0771 at 876.091 kb on + strand, within Psyr_0771 at 876.134 kb on + strand, within Psyr_0771 at 876.134 kb on + strand, within Psyr_0771 at 876.134 kb on + strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.135 kb on - strand, within Psyr_0771 at 876.138 kb on + strand, within Psyr_0771 at 876.138 kb on + strand, within Psyr_0771 at 876.139 kb on - strand, within Psyr_0771 at 876.347 kb on - strand, within Psyr_0771 at 876.724 kb on + strand at 876.724 kb on + strand at 876.726 kb on + strand at 876.726 kb on + strand at 876.726 kb on + strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.968 kb on + strand, within Psyr_0772 at 877.084 kb on + strand, within Psyr_0772 at 877.496 kb on - strand at 877.652 kb on - strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.811 kb on - strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.206 kb on + strand, within Psyr_0773 at 878.206 kb on + strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.228 kb on + strand, within Psyr_0773 at 878.229 kb on - strand, within Psyr_0773 at 878.330 kb on - strand, within Psyr_0773 at 878.330 kb on - strand, within Psyr_0773
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 875,785 - Psyr_0771 0.16 -2.7 875,789 + Psyr_0771 0.17 +0.6 875,789 + Psyr_0771 0.17 +1.2 875,789 + Psyr_0771 0.17 +1.4 875,790 - Psyr_0771 0.17 -2.7 875,884 - Psyr_0771 0.25 -1.6 876,042 + Psyr_0771 0.39 +0.5 876,091 + Psyr_0771 0.43 -1.2 876,134 + Psyr_0771 0.47 +0.8 876,134 + Psyr_0771 0.47 -2.4 876,134 + Psyr_0771 0.47 +0.0 876,135 - Psyr_0771 0.47 +3.0 876,135 - Psyr_0771 0.47 -1.2 876,135 - Psyr_0771 0.47 +0.8 876,135 - Psyr_0771 0.47 +1.0 876,135 - Psyr_0771 0.47 +1.4 876,135 - Psyr_0771 0.47 -1.1 876,135 - Psyr_0771 0.47 +0.4 876,135 - Psyr_0771 0.47 -1.4 876,138 + Psyr_0771 0.47 +0.4 876,138 + Psyr_0771 0.47 -0.1 876,139 - Psyr_0771 0.47 +1.0 876,347 - Psyr_0771 0.65 -0.2 876,724 + +1.8 876,724 + -2.3 876,726 + -0.2 876,726 + -0.6 876,726 + +2.9 876,727 - -1.4 876,727 - +0.1 876,727 - +0.4 876,968 + Psyr_0772 0.28 +1.3 877,084 + Psyr_0772 0.44 +1.3 877,496 - -0.1 877,652 - Psyr_0773 0.13 +0.7 877,807 + Psyr_0773 0.27 +2.1 877,807 + Psyr_0773 0.27 -3.2 877,807 + Psyr_0773 0.27 +0.5 877,807 + Psyr_0773 0.27 +1.9 877,807 + Psyr_0773 0.27 -0.1 877,807 + Psyr_0773 0.27 -1.1 877,808 - Psyr_0773 0.27 +1.2 877,808 - Psyr_0773 0.27 -2.8 877,808 - Psyr_0773 0.27 +2.3 877,808 - Psyr_0773 0.27 +0.7 877,808 - Psyr_0773 0.27 -2.4 877,808 - Psyr_0773 0.27 -4.1 877,810 + Psyr_0773 0.27 +0.9 877,810 + Psyr_0773 0.27 +1.7 877,811 - Psyr_0773 0.27 +0.4 878,182 + Psyr_0773 0.61 +2.6 878,182 + Psyr_0773 0.61 +1.4 878,182 + Psyr_0773 0.61 +0.7 878,182 + Psyr_0773 0.61 -0.2 878,182 + Psyr_0773 0.61 -2.3 878,183 - Psyr_0773 0.61 -1.5 878,183 - Psyr_0773 0.61 -3.2 878,206 + Psyr_0773 0.63 +0.6 878,206 + Psyr_0773 0.63 +0.5 878,207 - Psyr_0773 0.63 +0.8 878,207 - Psyr_0773 0.63 +1.4 878,228 + Psyr_0773 0.65 +2.4 878,229 - Psyr_0773 0.65 +0.5 878,330 - Psyr_0773 0.74 +2.1 878,330 - Psyr_0773 0.74 -0.2
Or see this region's nucleotide sequence