Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0716 and Psyr_0717 overlap by 4 nucleotides Psyr_0717 and Psyr_0718 are separated by 11 nucleotides Psyr_0718 and Psyr_0719 overlap by 14 nucleotides
Psyr_0716: Psyr_0716 - type IV pilus assembly protein PilV, at 819,437 to 819,952
_0716
Psyr_0717: Psyr_0717 - type IV pilus assembly protein PilW, at 819,949 to 820,656
_0717
Psyr_0718: Psyr_0718 - type IV pilus assembly protein PilX, at 820,668 to 821,162
_0718
Psyr_0719: Psyr_0719 - type IV pilus-associated protein, putative, at 821,149 to 824,358
_0719
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 819.669 kb on + strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.670 kb on - strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.677 kb on - strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.872 kb on - strand, within Psyr_0716 at 820.037 kb on + strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.060 kb on + strand, within Psyr_0717 at 820.060 kb on + strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.171 kb on - strand, within Psyr_0717 at 820.171 kb on - strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.290 kb on + strand, within Psyr_0717 at 820.340 kb on - strand, within Psyr_0717 at 820.399 kb on + strand, within Psyr_0717 at 820.433 kb on - strand, within Psyr_0717 at 820.433 kb on - strand, within Psyr_0717 at 820.463 kb on + strand, within Psyr_0717 at 820.464 kb on - strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.520 kb on - strand, within Psyr_0717 at 820.520 kb on - strand, within Psyr_0717 at 820.520 kb on - strand, within Psyr_0717 at 820.521 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.557 kb on - strand, within Psyr_0717 at 820.621 kb on + strand at 820.621 kb on + strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.636 kb on + strand at 820.637 kb on - strand at 820.835 kb on + strand, within Psyr_0718 at 820.919 kb on + strand, within Psyr_0718 at 820.958 kb on - strand, within Psyr_0718 at 821.037 kb on - strand, within Psyr_0718 at 821.053 kb on + strand, within Psyr_0718 at 821.091 kb on + strand, within Psyr_0718 at 821.091 kb on + strand, within Psyr_0718 at 821.144 kb on + strand at 821.144 kb on + strand at 821.144 kb on + strand at 821.144 kb on + strand at 821.145 kb on - strand at 821.145 kb on - strand at 821.145 kb on - strand at 821.145 kb on - strand at 821.148 kb on + strand at 821.148 kb on + strand at 821.148 kb on + strand at 821.149 kb on - strand at 821.149 kb on - strand at 821.149 kb on - strand at 821.149 kb on - strand at 821.149 kb on - strand at 821.161 kb on - strand at 821.185 kb on + strand at 821.185 kb on + strand at 821.186 kb on - strand at 821.212 kb on + strand at 821.212 kb on + strand at 821.212 kb on + strand at 821.212 kb on + strand at 821.213 kb on - strand at 821.213 kb on - strand at 821.213 kb on - strand at 821.213 kb on - strand at 821.230 kb on + strand at 821.289 kb on + strand at 821.289 kb on + strand at 821.290 kb on - strand at 821.290 kb on - strand at 821.290 kb on - strand at 821.304 kb on + strand at 821.305 kb on - strand at 821.316 kb on + strand at 821.316 kb on + strand at 821.317 kb on - strand at 821.317 kb on - strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.320 kb on + strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.321 kb on - strand at 821.377 kb on + strand at 821.377 kb on + strand at 821.378 kb on - strand at 821.378 kb on - strand at 821.378 kb on - strand at 821.380 kb on + strand at 821.381 kb on - strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.417 kb on + strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.418 kb on - strand at 821.479 kb on + strand, within Psyr_0719 at 821.484 kb on + strand, within Psyr_0719 at 821.484 kb on + strand, within Psyr_0719 at 821.484 kb on + strand, within Psyr_0719 at 821.484 kb on + strand, within Psyr_0719 at 821.485 kb on - strand, within Psyr_0719 at 821.539 kb on - strand, within Psyr_0719 at 821.593 kb on + strand, within Psyr_0719 at 821.596 kb on - strand, within Psyr_0719 at 821.605 kb on + strand, within Psyr_0719 at 821.605 kb on + strand, within Psyr_0719 at 821.606 kb on - strand, within Psyr_0719 at 821.651 kb on + strand, within Psyr_0719 at 821.651 kb on + strand, within Psyr_0719 at 821.664 kb on + strand, within Psyr_0719 at 821.664 kb on + strand, within Psyr_0719 at 821.665 kb on - strand, within Psyr_0719 at 821.847 kb on + strand, within Psyr_0719 at 821.847 kb on + strand, within Psyr_0719 at 821.847 kb on + strand, within Psyr_0719 at 821.851 kb on + strand, within Psyr_0719 at 821.851 kb on + strand, within Psyr_0719 at 821.883 kb on + strand, within Psyr_0719 at 821.892 kb on + strand, within Psyr_0719 at 821.893 kb on - strand, within Psyr_0719 at 821.914 kb on - strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.959 kb on + strand, within Psyr_0719 at 821.960 kb on - strand, within Psyr_0719 at 821.960 kb on - strand, within Psyr_0719 at 821.960 kb on - strand, within Psyr_0719 at 821.962 kb on + strand, within Psyr_0719 at 821.962 kb on + strand, within Psyr_0719 at 821.962 kb on + strand, within Psyr_0719 at 821.962 kb on + strand, within Psyr_0719 at 821.962 kb on + strand, within Psyr_0719 at 821.963 kb on - strand, within Psyr_0719 at 821.963 kb on - strand, within Psyr_0719 at 821.963 kb on - strand, within Psyr_0719 at 822.001 kb on + strand, within Psyr_0719 at 822.002 kb on - strand, within Psyr_0719 at 822.002 kb on - strand, within Psyr_0719 at 822.019 kb on + strand, within Psyr_0719 at 822.019 kb on + strand, within Psyr_0719 at 822.019 kb on + strand, within Psyr_0719 at 822.019 kb on + strand, within Psyr_0719 at 822.019 kb on + strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.020 kb on - strand, within Psyr_0719 at 822.055 kb on + strand, within Psyr_0719 at 822.066 kb on + strand, within Psyr_0719 at 822.067 kb on - strand, within Psyr_0719 at 822.088 kb on + strand, within Psyr_0719 at 822.088 kb on + strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719 at 822.089 kb on - strand, within Psyr_0719
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 819,669 + Psyr_0716 0.45 +2.3 819,669 + Psyr_0716 0.45 -2.0 819,670 - Psyr_0716 0.45 -0.1 819,676 + Psyr_0716 0.46 +0.7 819,676 + Psyr_0716 0.46 +0.9 819,677 - Psyr_0716 0.47 -0.4 819,680 + Psyr_0716 0.47 -0.4 819,680 + Psyr_0716 0.47 +0.9 819,682 + Psyr_0716 0.47 -2.4 819,682 + Psyr_0716 0.47 +0.1 819,683 - Psyr_0716 0.48 +0.0 819,683 - Psyr_0716 0.48 -1.5 819,683 - Psyr_0716 0.48 +0.9 819,817 + Psyr_0716 0.74 +0.5 819,817 + Psyr_0716 0.74 +2.1 819,817 + Psyr_0716 0.74 +1.5 819,817 + Psyr_0716 0.74 -1.1 819,818 - Psyr_0716 0.74 -1.8 819,818 - Psyr_0716 0.74 +0.1 819,818 - Psyr_0716 0.74 +1.2 819,872 - Psyr_0716 0.84 -1.3 820,037 + Psyr_0717 0.12 +1.0 820,038 - Psyr_0717 0.13 +2.7 820,038 - Psyr_0717 0.13 +3.9 820,038 - Psyr_0717 0.13 -1.3 820,038 - Psyr_0717 0.13 +1.8 820,060 + Psyr_0717 0.16 +0.2 820,060 + Psyr_0717 0.16 +0.2 820,061 - Psyr_0717 0.16 -2.2 820,061 - Psyr_0717 0.16 +2.1 820,150 + Psyr_0717 0.28 -0.2 820,150 + Psyr_0717 0.28 -3.5 820,150 + Psyr_0717 0.28 -1.9 820,150 + Psyr_0717 0.28 -1.5 820,150 + Psyr_0717 0.28 +0.7 820,150 + Psyr_0717 0.28 +0.4 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +0.5 820,150 + Psyr_0717 0.28 +2.6 820,150 + Psyr_0717 0.28 -0.5 820,150 + Psyr_0717 0.28 -1.3 820,150 + Psyr_0717 0.28 -2.0 820,150 + Psyr_0717 0.28 -0.1 820,151 - Psyr_0717 0.29 -0.3 820,151 - Psyr_0717 0.29 -3.0 820,151 - Psyr_0717 0.29 +0.1 820,151 - Psyr_0717 0.29 +2.3 820,151 - Psyr_0717 0.29 -1.7 820,151 - Psyr_0717 0.29 +1.5 820,151 - Psyr_0717 0.29 -0.2 820,151 - Psyr_0717 0.29 +2.7 820,151 - Psyr_0717 0.29 +1.1 820,151 - Psyr_0717 0.29 +0.7 820,151 - Psyr_0717 0.29 -2.0 820,151 - Psyr_0717 0.29 +2.6 820,151 - Psyr_0717 0.29 +1.6 820,151 - Psyr_0717 0.29 -0.1 820,151 - Psyr_0717 0.29 +0.5 820,151 - Psyr_0717 0.29 -0.3 820,151 - Psyr_0717 0.29 -0.7 820,171 - Psyr_0717 0.31 +1.1 820,171 - Psyr_0717 0.31 -1.9 820,174 + Psyr_0717 0.32 -3.3 820,174 + Psyr_0717 0.32 +0.8 820,174 + Psyr_0717 0.32 +1.5 820,174 + Psyr_0717 0.32 -1.3 820,174 + Psyr_0717 0.32 +0.1 820,174 + Psyr_0717 0.32 -0.0 820,175 - Psyr_0717 0.32 -2.1 820,175 - Psyr_0717 0.32 +1.1 820,175 - Psyr_0717 0.32 +0.5 820,175 - Psyr_0717 0.32 +0.6 820,184 + Psyr_0717 0.33 +1.5 820,184 + Psyr_0717 0.33 +0.7 820,290 + Psyr_0717 0.48 +2.3 820,340 - Psyr_0717 0.55 +0.5 820,399 + Psyr_0717 0.64 +0.4 820,433 - Psyr_0717 0.68 +0.2 820,433 - Psyr_0717 0.68 -0.4 820,463 + Psyr_0717 0.73 +1.4 820,464 - Psyr_0717 0.73 +1.3 820,519 + Psyr_0717 0.81 +0.1 820,519 + Psyr_0717 0.81 +5.3 820,519 + Psyr_0717 0.81 -1.5 820,520 - Psyr_0717 0.81 -0.5 820,520 - Psyr_0717 0.81 -1.3 820,520 - Psyr_0717 0.81 -1.0 820,521 + Psyr_0717 0.81 -0.5 820,556 + Psyr_0717 0.86 -1.5 820,556 + Psyr_0717 0.86 -1.8 820,556 + Psyr_0717 0.86 +1.5 820,557 - Psyr_0717 0.86 +1.3 820,621 + -0.1 820,621 + +1.0 820,622 - +2.6 820,622 - +3.1 820,622 - -0.9 820,622 - +0.6 820,622 - -1.9 820,622 - -2.9 820,622 - +0.5 820,636 + +0.6 820,637 - +2.4 820,835 + Psyr_0718 0.34 +1.5 820,919 + Psyr_0718 0.51 +1.8 820,958 - Psyr_0718 0.59 +1.5 821,037 - Psyr_0718 0.75 +0.2 821,053 + Psyr_0718 0.78 +1.2 821,091 + Psyr_0718 0.85 -2.7 821,091 + Psyr_0718 0.85 +2.7 821,144 + +1.0 821,144 + +2.5 821,144 + -0.1 821,144 + -1.4 821,145 - -2.1 821,145 - -0.3 821,145 - +0.7 821,145 - -0.7 821,148 + +1.3 821,148 + -0.3 821,148 + +0.5 821,149 - +1.3 821,149 - -1.2 821,149 - -0.3 821,149 - -3.5 821,149 - -1.7 821,161 - -0.5 821,185 + -2.3 821,185 + -3.1 821,186 - +1.2 821,212 + +1.1 821,212 + -1.1 821,212 + -0.5 821,212 + +0.6 821,213 - +1.4 821,213 - -2.5 821,213 - -1.4 821,213 - -2.2 821,230 + +0.5 821,289 + +2.4 821,289 + +2.1 821,290 - -1.1 821,290 - -2.5 821,290 - +2.0 821,304 + +1.0 821,305 - +2.8 821,316 + +1.5 821,316 + -2.7 821,317 - -0.5 821,317 - +1.2 821,320 + +0.6 821,320 + -1.3 821,320 + +0.6 821,320 + +0.9 821,320 + +0.7 821,320 + +2.5 821,320 + -1.8 821,320 + +1.1 821,320 + +4.3 821,321 - -1.3 821,321 - -2.8 821,321 - +2.5 821,321 - +0.7 821,321 - +0.8 821,321 - -2.0 821,321 - +2.3 821,321 - +2.3 821,321 - +1.5 821,321 - +2.9 821,377 + -0.2 821,377 + -3.7 821,378 - -0.1 821,378 - +2.5 821,378 - -0.5 821,380 + +0.4 821,381 - -2.2 821,417 + -0.5 821,417 + -0.0 821,417 + +1.2 821,417 + -1.9 821,417 + +1.5 821,417 + +0.1 821,417 + +0.3 821,417 + +0.3 821,417 + -0.5 821,417 + +0.4 821,417 + +0.8 821,417 + -0.2 821,417 + +1.2 821,417 + -1.3 821,417 + +0.9 821,417 + +0.7 821,418 - +0.0 821,418 - -2.4 821,418 - +0.6 821,418 - -0.0 821,418 - +1.5 821,418 - +2.9 821,418 - +3.1 821,418 - -0.5 821,479 + Psyr_0719 0.10 -2.0 821,484 + Psyr_0719 0.10 +0.4 821,484 + Psyr_0719 0.10 -1.7 821,484 + Psyr_0719 0.10 +1.9 821,484 + Psyr_0719 0.10 +0.2 821,485 - Psyr_0719 0.10 +0.6 821,539 - Psyr_0719 0.12 -0.1 821,593 + Psyr_0719 0.14 +3.8 821,596 - Psyr_0719 0.14 +0.2 821,605 + Psyr_0719 0.14 -0.9 821,605 + Psyr_0719 0.14 -0.2 821,606 - Psyr_0719 0.14 -0.9 821,651 + Psyr_0719 0.16 +1.5 821,651 + Psyr_0719 0.16 +1.3 821,664 + Psyr_0719 0.16 -0.9 821,664 + Psyr_0719 0.16 +2.3 821,665 - Psyr_0719 0.16 -2.1 821,847 + Psyr_0719 0.22 +0.0 821,847 + Psyr_0719 0.22 +0.7 821,847 + Psyr_0719 0.22 -0.7 821,851 + Psyr_0719 0.22 +3.1 821,851 + Psyr_0719 0.22 -0.8 821,883 + Psyr_0719 0.23 -1.3 821,892 + Psyr_0719 0.23 -1.1 821,893 - Psyr_0719 0.23 +3.8 821,914 - Psyr_0719 0.24 +1.1 821,959 + Psyr_0719 0.25 -0.3 821,959 + Psyr_0719 0.25 +1.6 821,959 + Psyr_0719 0.25 +2.0 821,959 + Psyr_0719 0.25 +1.8 821,959 + Psyr_0719 0.25 +4.8 821,959 + Psyr_0719 0.25 -2.5 821,959 + Psyr_0719 0.25 +0.2 821,960 - Psyr_0719 0.25 +0.2 821,960 - Psyr_0719 0.25 -0.1 821,960 - Psyr_0719 0.25 -0.1 821,962 + Psyr_0719 0.25 +2.1 821,962 + Psyr_0719 0.25 +0.3 821,962 + Psyr_0719 0.25 -1.7 821,962 + Psyr_0719 0.25 +1.3 821,962 + Psyr_0719 0.25 +2.1 821,963 - Psyr_0719 0.25 -0.4 821,963 - Psyr_0719 0.25 -2.5 821,963 - Psyr_0719 0.25 +4.5 822,001 + Psyr_0719 0.27 +1.6 822,002 - Psyr_0719 0.27 +2.0 822,002 - Psyr_0719 0.27 +1.0 822,019 + Psyr_0719 0.27 -0.5 822,019 + Psyr_0719 0.27 +0.5 822,019 + Psyr_0719 0.27 -2.2 822,019 + Psyr_0719 0.27 +0.3 822,019 + Psyr_0719 0.27 -1.7 822,020 - Psyr_0719 0.27 +1.1 822,020 - Psyr_0719 0.27 -0.1 822,020 - Psyr_0719 0.27 -0.3 822,020 - Psyr_0719 0.27 +1.6 822,020 - Psyr_0719 0.27 -0.6 822,020 - Psyr_0719 0.27 +3.5 822,055 + Psyr_0719 0.28 -2.9 822,066 + Psyr_0719 0.29 -1.9 822,067 - Psyr_0719 0.29 +0.5 822,088 + Psyr_0719 0.29 +1.5 822,088 + Psyr_0719 0.29 -0.7 822,089 - Psyr_0719 0.29 -0.3 822,089 - Psyr_0719 0.29 +2.9 822,089 - Psyr_0719 0.29 -1.1 822,089 - Psyr_0719 0.29 +1.5 822,089 - Psyr_0719 0.29 -2.7 822,089 - Psyr_0719 0.29 +0.1
Or see this region's nucleotide sequence