Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0683

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0682 and Psyr_0683 are separated by 120 nucleotidesPsyr_0683 and Psyr_0684 are separated by 96 nucleotidesPsyr_0684 and Psyr_0685 overlap by 14 nucleotides Psyr_0682: Psyr_0682 - DNA helicase/exodeoxyribonuclease V, alpha subunit, at 784,699 to 786,792 _0682 Psyr_0683: Psyr_0683 - NUDIX hydrolase, at 786,913 to 787,317 _0683 Psyr_0684: Psyr_0684 - hypothetical protein, at 787,414 to 787,830 _0684 Psyr_0685: Psyr_0685 - PAAR, at 787,817 to 788,956 _0685 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 786.531 kb on - strand, within Psyr_0682at 786.574 kb on + strand, within Psyr_0682at 786.837 kb on - strandat 786.837 kb on - strandat 786.854 kb on - strandat 786.906 kb on + strandat 786.906 kb on + strandat 786.907 kb on - strandat 786.907 kb on - strandat 787.061 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.134 kb on + strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.135 kb on - strand, within Psyr_0683at 787.272 kb on + strand, within Psyr_0683at 787.272 kb on + strand, within Psyr_0683at 787.272 kb on + strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.273 kb on - strand, within Psyr_0683at 787.312 kb on - strandat 787.312 kb on - strandat 787.343 kb on + strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.344 kb on - strandat 787.370 kb on - strandat 787.497 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.514 kb on + strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.515 kb on - strand, within Psyr_0684at 787.518 kb on + strand, within Psyr_0684at 787.519 kb on - strand, within Psyr_0684at 787.572 kb on + strand, within Psyr_0684at 787.596 kb on + strand, within Psyr_0684at 787.596 kb on + strand, within Psyr_0684at 787.620 kb on + strand, within Psyr_0684at 787.666 kb on + strand, within Psyr_0684at 787.667 kb on - strand, within Psyr_0684at 787.683 kb on + strand, within Psyr_0684at 787.690 kb on + strand, within Psyr_0684at 787.691 kb on - strand, within Psyr_0684at 787.695 kb on - strand, within Psyr_0684at 787.695 kb on - strand, within Psyr_0684at 787.695 kb on - strand, within Psyr_0684at 787.725 kb on - strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.727 kb on + strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.728 kb on - strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.750 kb on + strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.751 kb on - strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.754 kb on + strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.755 kb on - strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.786 kb on + strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.787 kb on - strand, within Psyr_0684at 787.789 kb on - strandat 787.859 kb on + strandat 787.860 kb on - strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.861 kb on + strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.862 kb on - strandat 787.866 kb on - strandat 787.926 kb on + strandat 787.941 kb on - strand, within Psyr_0685at 788.026 kb on + strand, within Psyr_0685at 788.037 kb on - strand, within Psyr_0685at 788.107 kb on + strand, within Psyr_0685at 788.108 kb on - strand, within Psyr_0685at 788.108 kb on - strand, within Psyr_0685at 788.131 kb on - strand, within Psyr_0685at 788.149 kb on + strand, within Psyr_0685at 788.149 kb on + strand, within Psyr_0685at 788.150 kb on - strand, within Psyr_0685at 788.155 kb on - strand, within Psyr_0685at 788.155 kb on - strand, within Psyr_0685at 788.160 kb on + strand, within Psyr_0685at 788.166 kb on + strand, within Psyr_0685at 788.167 kb on - strand, within Psyr_0685at 788.293 kb on + strand, within Psyr_0685at 788.293 kb on + strand, within Psyr_0685at 788.294 kb on - strand, within Psyr_0685

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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786,531 - Psyr_0682 0.87 -0.9
786,574 + Psyr_0682 0.90 -0.5
786,837 - -1.0
786,837 - -0.4
786,854 - -1.7
786,906 + +0.9
786,906 + -0.5
786,907 - -3.7
786,907 - +0.2
787,061 + Psyr_0683 0.37 +1.0
787,134 + Psyr_0683 0.55 -2.6
787,134 + Psyr_0683 0.55 +4.2
787,134 + Psyr_0683 0.55 +1.2
787,134 + Psyr_0683 0.55 +0.7
787,134 + Psyr_0683 0.55 +1.8
787,134 + Psyr_0683 0.55 -0.9
787,134 + Psyr_0683 0.55 -1.5
787,134 + Psyr_0683 0.55 +0.3
787,134 + Psyr_0683 0.55 +2.2
787,135 - Psyr_0683 0.55 +1.5
787,135 - Psyr_0683 0.55 +1.5
787,135 - Psyr_0683 0.55 +1.2
787,135 - Psyr_0683 0.55 +2.6
787,135 - Psyr_0683 0.55 -0.5
787,135 - Psyr_0683 0.55 +0.5
787,135 - Psyr_0683 0.55 -2.1
787,135 - Psyr_0683 0.55 +0.6
787,135 - Psyr_0683 0.55 +1.8
787,135 - Psyr_0683 0.55 +0.6
787,135 - Psyr_0683 0.55 +0.9
787,135 - Psyr_0683 0.55 -1.9
787,135 - Psyr_0683 0.55 -2.3
787,135 - Psyr_0683 0.55 +1.9
787,135 - Psyr_0683 0.55 +0.7
787,135 - Psyr_0683 0.55 +0.5
787,135 - Psyr_0683 0.55 +0.5
787,272 + Psyr_0683 0.89 -2.2
787,272 + Psyr_0683 0.89 +2.3
787,272 + Psyr_0683 0.89 -3.2
787,273 - Psyr_0683 0.89 -0.7
787,273 - Psyr_0683 0.89 +0.3
787,273 - Psyr_0683 0.89 +2.4
787,312 - +3.1
787,312 - -1.1
787,343 + -1.1
787,344 - +0.6
787,344 - +2.8
787,344 - +2.6
787,344 - +1.0
787,344 - +1.0
787,344 - +2.5
787,344 - +1.5
787,370 - +0.7
787,497 + Psyr_0684 0.20 +3.1
787,514 + Psyr_0684 0.24 +1.3
787,514 + Psyr_0684 0.24 -0.8
787,514 + Psyr_0684 0.24 +1.0
787,515 - Psyr_0684 0.24 -3.5
787,515 - Psyr_0684 0.24 +0.1
787,515 - Psyr_0684 0.24 -2.1
787,515 - Psyr_0684 0.24 -1.1
787,515 - Psyr_0684 0.24 -1.3
787,515 - Psyr_0684 0.24 -0.8
787,518 + Psyr_0684 0.25 +0.4
787,519 - Psyr_0684 0.25 -2.3
787,572 + Psyr_0684 0.38 -0.8
787,596 + Psyr_0684 0.44 -0.1
787,596 + Psyr_0684 0.44 -2.4
787,620 + Psyr_0684 0.49 -1.8
787,666 + Psyr_0684 0.60 -1.7
787,667 - Psyr_0684 0.61 +0.9
787,683 + Psyr_0684 0.65 -1.3
787,690 + Psyr_0684 0.66 +0.6
787,691 - Psyr_0684 0.66 -1.1
787,695 - Psyr_0684 0.67 -2.3
787,695 - Psyr_0684 0.67 +2.1
787,695 - Psyr_0684 0.67 -1.3
787,725 - Psyr_0684 0.75 -0.5
787,727 + Psyr_0684 0.75 +2.3
787,727 + Psyr_0684 0.75 -0.8
787,728 - Psyr_0684 0.75 -1.0
787,728 - Psyr_0684 0.75 +1.5
787,728 - Psyr_0684 0.75 -0.0
787,728 - Psyr_0684 0.75 +0.3
787,728 - Psyr_0684 0.75 +0.3
787,728 - Psyr_0684 0.75 +0.5
787,750 + Psyr_0684 0.81 +0.9
787,750 + Psyr_0684 0.81 -2.6
787,750 + Psyr_0684 0.81 -1.3
787,751 - Psyr_0684 0.81 +0.0
787,751 - Psyr_0684 0.81 +0.8
787,751 - Psyr_0684 0.81 +3.1
787,751 - Psyr_0684 0.81 +2.4
787,754 + Psyr_0684 0.82 -1.6
787,754 + Psyr_0684 0.82 -0.4
787,754 + Psyr_0684 0.82 -0.8
787,754 + Psyr_0684 0.82 +1.6
787,755 - Psyr_0684 0.82 -0.9
787,755 - Psyr_0684 0.82 +0.5
787,755 - Psyr_0684 0.82 +0.7
787,755 - Psyr_0684 0.82 -1.5
787,786 + Psyr_0684 0.89 +2.1
787,786 + Psyr_0684 0.89 -3.3
787,786 + Psyr_0684 0.89 -0.6
787,787 - Psyr_0684 0.89 +1.1
787,787 - Psyr_0684 0.89 +1.9
787,787 - Psyr_0684 0.89 -2.2
787,789 - +0.5
787,859 + -3.6
787,860 - +1.5
787,861 + -2.2
787,861 + +1.8
787,861 + -0.3
787,861 + +1.2
787,862 - -1.7
787,862 - -0.7
787,862 - +1.4
787,862 - -0.8
787,862 - +3.9
787,862 - -1.1
787,862 - -2.2
787,862 - -0.3
787,866 - +1.1
787,926 + -1.3
787,941 - Psyr_0685 0.11 +0.8
788,026 + Psyr_0685 0.18 -1.8
788,037 - Psyr_0685 0.19 +0.6
788,107 + Psyr_0685 0.25 +0.7
788,108 - Psyr_0685 0.26 +1.3
788,108 - Psyr_0685 0.26 -2.5
788,131 - Psyr_0685 0.28 +0.8
788,149 + Psyr_0685 0.29 -1.8
788,149 + Psyr_0685 0.29 -1.2
788,150 - Psyr_0685 0.29 +0.1
788,155 - Psyr_0685 0.30 -2.7
788,155 - Psyr_0685 0.30 +1.1
788,160 + Psyr_0685 0.30 -1.8
788,166 + Psyr_0685 0.31 -1.0
788,167 - Psyr_0685 0.31 -0.1
788,293 + Psyr_0685 0.42 +1.0
788,293 + Psyr_0685 0.42 -0.2
788,294 - Psyr_0685 0.42 -3.3

Or see this region's nucleotide sequence