Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0668 and Psyr_0669 are separated by 111 nucleotides Psyr_0669 and Psyr_0670 are separated by 123 nucleotides
Psyr_0668: Psyr_0668 - Sodium/calcium exchanger membrane region, at 756,744 to 757,847
_0668
Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314
_0669
Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163
_0670
Position (kb) 757
758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 757.053 kb on + strand, within Psyr_0668 at 757.053 kb on + strand, within Psyr_0668 at 757.053 kb on + strand, within Psyr_0668 at 757.134 kb on + strand, within Psyr_0668 at 757.134 kb on + strand, within Psyr_0668 at 757.134 kb on + strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.159 kb on - strand, within Psyr_0668 at 757.201 kb on + strand, within Psyr_0668 at 757.236 kb on + strand, within Psyr_0668 at 757.236 kb on + strand, within Psyr_0668 at 757.236 kb on + strand, within Psyr_0668 at 757.237 kb on - strand, within Psyr_0668 at 757.237 kb on - strand, within Psyr_0668 at 757.237 kb on - strand, within Psyr_0668 at 757.247 kb on + strand, within Psyr_0668 at 757.248 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.323 kb on + strand, within Psyr_0668 at 757.323 kb on + strand, within Psyr_0668 at 757.324 kb on - strand, within Psyr_0668 at 757.674 kb on + strand, within Psyr_0668 at 757.674 kb on + strand, within Psyr_0668 at 757.845 kb on + strand at 758.293 kb on + strand, within Psyr_0669 at 758.293 kb on + strand, within Psyr_0669 at 758.294 kb on - strand, within Psyr_0669 at 758.294 kb on - strand, within Psyr_0669 at 758.517 kb on - strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.743 kb on + strand, within Psyr_0669 at 758.743 kb on + strand, within Psyr_0669 at 758.743 kb on + strand, within Psyr_0669 at 758.932 kb on + strand, within Psyr_0669 at 758.932 kb on + strand, within Psyr_0669 at 758.932 kb on + strand, within Psyr_0669 at 758.932 kb on + strand, within Psyr_0669 at 758.933 kb on - strand, within Psyr_0669 at 758.933 kb on - strand, within Psyr_0669 at 758.933 kb on - strand, within Psyr_0669 at 758.933 kb on - strand, within Psyr_0669 at 758.933 kb on - strand, within Psyr_0669 at 759.423 kb on + strand at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.677 kb on - strand, within Psyr_0670 at 759.677 kb on - strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.207 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 757,053 + Psyr_0668 0.28 +1.8 757,053 + Psyr_0668 0.28 -1.2 757,053 + Psyr_0668 0.28 -0.7 757,134 + Psyr_0668 0.35 -1.3 757,134 + Psyr_0668 0.35 -1.8 757,134 + Psyr_0668 0.35 -1.3 757,135 - Psyr_0668 0.35 -0.8 757,135 - Psyr_0668 0.35 -0.7 757,158 + Psyr_0668 0.38 +1.3 757,158 + Psyr_0668 0.38 +2.9 757,158 + Psyr_0668 0.38 -0.4 757,159 - Psyr_0668 0.38 -0.1 757,201 + Psyr_0668 0.41 +3.1 757,236 + Psyr_0668 0.45 +1.1 757,236 + Psyr_0668 0.45 -1.9 757,236 + Psyr_0668 0.45 +2.3 757,237 - Psyr_0668 0.45 -2.1 757,237 - Psyr_0668 0.45 -0.3 757,237 - Psyr_0668 0.45 +1.6 757,247 + Psyr_0668 0.46 -3.5 757,248 - Psyr_0668 0.46 -1.4 757,273 - Psyr_0668 0.48 +0.2 757,273 - Psyr_0668 0.48 -2.5 757,323 + Psyr_0668 0.52 +1.7 757,323 + Psyr_0668 0.52 -1.5 757,324 - Psyr_0668 0.53 +1.7 757,674 + Psyr_0668 0.84 -1.5 757,674 + Psyr_0668 0.84 +1.6 757,845 + +2.7 758,293 + Psyr_0669 0.25 +0.1 758,293 + Psyr_0669 0.25 -0.7 758,294 - Psyr_0669 0.25 -0.0 758,294 - Psyr_0669 0.25 -0.3 758,517 - Psyr_0669 0.41 +1.6 758,535 + Psyr_0669 0.42 -1.2 758,535 + Psyr_0669 0.42 +1.7 758,535 + Psyr_0669 0.42 -1.9 758,536 - Psyr_0669 0.43 -0.1 758,536 - Psyr_0669 0.43 +0.0 758,536 - Psyr_0669 0.43 -0.9 758,536 - Psyr_0669 0.43 -1.5 758,743 + Psyr_0669 0.58 -2.1 758,743 + Psyr_0669 0.58 +2.5 758,743 + Psyr_0669 0.58 -0.8 758,932 + Psyr_0669 0.72 -2.8 758,932 + Psyr_0669 0.72 -0.7 758,932 + Psyr_0669 0.72 -1.3 758,932 + Psyr_0669 0.72 -2.2 758,933 - Psyr_0669 0.72 +1.2 758,933 - Psyr_0669 0.72 +0.4 758,933 - Psyr_0669 0.72 +3.0 758,933 - Psyr_0669 0.72 -2.3 758,933 - Psyr_0669 0.72 -2.6 759,423 + -2.1 759,676 + Psyr_0670 0.33 +0.6 759,676 + Psyr_0670 0.33 +0.4 759,676 + Psyr_0670 0.33 -0.5 759,676 + Psyr_0670 0.33 -1.5 759,677 - Psyr_0670 0.33 +0.3 759,677 - Psyr_0670 0.33 -2.1 760,021 - Psyr_0670 0.80 +1.3 760,021 - Psyr_0670 0.80 +3.9 760,021 - Psyr_0670 0.80 +0.4 760,207 + -0.4 760,258 + -1.7 760,258 + +1.5 760,258 + -2.4 760,258 + -0.6 760,258 + +0.3 760,258 + +1.4 760,259 - -1.2 760,259 - -3.4 760,259 - -0.4 760,259 - -1.7 760,259 - -2.3 760,259 - +0.8 760,259 - +1.3 760,287 + +0.4
Or see this region's nucleotide sequence