Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0617 and Psyr_0618 overlap by 4 nucleotides Psyr_0618 and Psyr_0619 are separated by 54 nucleotides Psyr_0619 and Psyr_0620 are separated by 191 nucleotides
Psyr_0617: Psyr_0617 - conserved hypothetical protein, at 705,149 to 706,924
_0617
Psyr_0618: Psyr_0618 - conserved hypothetical protein, at 706,921 to 707,526
_0618
Psyr_0619: Psyr_0619 - WavE lipopolysaccharide synthesis, at 707,581 to 708,624
_0619
Psyr_0620: Psyr_0620 - Outer membrane autotransporter barrel, at 708,816 to 711,095
_0620
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.828 kb on + strand at 706.829 kb on - strand at 706.844 kb on + strand at 706.880 kb on + strand at 706.881 kb on - strand at 706.904 kb on + strand at 706.904 kb on + strand at 706.904 kb on + strand at 706.905 kb on - strand at 706.928 kb on + strand at 706.929 kb on - strand at 707.044 kb on + strand, within Psyr_0618 at 707.045 kb on - strand, within Psyr_0618 at 707.170 kb on - strand, within Psyr_0618 at 707.254 kb on + strand, within Psyr_0618 at 707.255 kb on - strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.436 kb on - strand, within Psyr_0618 at 707.436 kb on - strand, within Psyr_0618 at 707.441 kb on + strand, within Psyr_0618 at 707.442 kb on - strand, within Psyr_0618 at 707.478 kb on - strand at 707.566 kb on + strand at 707.575 kb on - strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.667 kb on + strand at 707.667 kb on + strand at 707.667 kb on + strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.936 kb on + strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.953 kb on - strand, within Psyr_0619 at 708.007 kb on + strand, within Psyr_0619 at 708.007 kb on + strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.047 kb on + strand, within Psyr_0619 at 708.267 kb on - strand, within Psyr_0619 at 708.443 kb on - strand, within Psyr_0619 at 708.443 kb on - strand, within Psyr_0619 at 708.479 kb on - strand, within Psyr_0619 at 708.479 kb on - strand, within Psyr_0619 at 708.530 kb on + strand at 708.530 kb on + strand at 708.531 kb on - strand at 708.531 kb on - strand at 708.622 kb on + strand at 708.622 kb on + strand at 708.622 kb on + strand at 708.623 kb on - strand at 708.623 kb on - strand at 708.623 kb on - strand at 708.671 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.681 kb on - strand at 708.681 kb on - strand at 708.690 kb on + strand at 708.691 kb on - strand at 708.704 kb on + strand at 708.710 kb on - strand at 708.754 kb on + strand at 708.755 kb on - strand at 708.755 kb on - strand at 708.761 kb on + strand at 708.762 kb on - strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.792 kb on - strand at 708.792 kb on - strand at 708.792 kb on - strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.989 kb on - strand at 708.989 kb on - strand at 708.989 kb on - strand at 708.989 kb on - strand at 709.076 kb on + strand, within Psyr_0620 at 709.076 kb on + strand, within Psyr_0620 at 709.136 kb on + strand, within Psyr_0620 at 709.259 kb on - strand, within Psyr_0620 at 709.283 kb on + strand, within Psyr_0620 at 709.328 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.381 kb on + strand, within Psyr_0620 at 709.385 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.529 kb on + strand, within Psyr_0620 at 709.529 kb on + strand, within Psyr_0620 at 709.530 kb on - strand, within Psyr_0620 at 709.530 kb on - strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.566 kb on + strand, within Psyr_0620 at 709.599 kb on + strand, within Psyr_0620
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 706,711 + Psyr_0617 0.88 +1.9 706,711 + Psyr_0617 0.88 +0.2 706,711 + Psyr_0617 0.88 -0.8 706,711 + Psyr_0617 0.88 +0.0 706,711 + Psyr_0617 0.88 -3.4 706,712 - Psyr_0617 0.88 -0.0 706,712 - Psyr_0617 0.88 -0.8 706,712 - Psyr_0617 0.88 -2.2 706,712 - Psyr_0617 0.88 +1.9 706,712 - Psyr_0617 0.88 +7.1 706,712 - Psyr_0617 0.88 +1.6 706,712 - Psyr_0617 0.88 -2.4 706,763 + +2.6 706,763 + -0.3 706,763 + -2.1 706,763 + -0.8 706,763 + -1.4 706,764 - -1.0 706,764 - -1.8 706,764 - +1.5 706,764 - +1.0 706,764 - +1.3 706,828 + -3.2 706,829 - -3.0 706,844 + -0.0 706,880 + -0.8 706,881 - +0.4 706,904 + -1.0 706,904 + -2.4 706,904 + -1.9 706,905 - +0.8 706,928 + -2.5 706,929 - +2.3 707,044 + Psyr_0618 0.20 +1.6 707,045 - Psyr_0618 0.20 +0.2 707,170 - Psyr_0618 0.41 +0.6 707,254 + Psyr_0618 0.55 -3.0 707,255 - Psyr_0618 0.55 -2.4 707,260 + Psyr_0618 0.56 -0.9 707,260 + Psyr_0618 0.56 +0.1 707,260 + Psyr_0618 0.56 -1.0 707,260 + Psyr_0618 0.56 -1.0 707,260 + Psyr_0618 0.56 -1.2 707,261 - Psyr_0618 0.56 +1.4 707,261 - Psyr_0618 0.56 -0.2 707,261 - Psyr_0618 0.56 -0.4 707,261 - Psyr_0618 0.56 +0.7 707,261 - Psyr_0618 0.56 +0.3 707,261 - Psyr_0618 0.56 -0.0 707,261 - Psyr_0618 0.56 +2.9 707,261 - Psyr_0618 0.56 -0.8 707,436 - Psyr_0618 0.85 -0.8 707,436 - Psyr_0618 0.85 +1.8 707,441 + Psyr_0618 0.86 -2.5 707,442 - Psyr_0618 0.86 -2.4 707,478 - +2.6 707,566 + +0.7 707,575 - +1.2 707,580 + -2.3 707,580 + +1.2 707,580 + +0.6 707,580 + +1.4 707,580 + -2.9 707,580 + +0.6 707,580 + +1.3 707,580 + +1.2 707,580 + +0.3 707,581 - -0.8 707,581 - +0.9 707,581 - -1.4 707,581 - +1.6 707,581 - -0.9 707,581 - +0.2 707,581 - +0.9 707,581 - -2.1 707,581 - +1.2 707,581 - -1.6 707,667 + +1.4 707,667 + -1.6 707,667 + +1.6 707,668 - -2.4 707,668 - -3.6 707,668 - -0.4 707,668 - +0.5 707,745 + Psyr_0619 0.16 -0.0 707,745 + Psyr_0619 0.16 -1.6 707,745 + Psyr_0619 0.16 +1.1 707,745 + Psyr_0619 0.16 -1.2 707,745 + Psyr_0619 0.16 -0.7 707,745 + Psyr_0619 0.16 -1.0 707,745 + Psyr_0619 0.16 +0.3 707,746 - Psyr_0619 0.16 -3.0 707,746 - Psyr_0619 0.16 +0.6 707,746 - Psyr_0619 0.16 +1.0 707,746 - Psyr_0619 0.16 -0.0 707,746 - Psyr_0619 0.16 +2.9 707,746 - Psyr_0619 0.16 -2.2 707,746 - Psyr_0619 0.16 -0.4 707,746 - Psyr_0619 0.16 +1.2 707,881 + Psyr_0619 0.29 -1.1 707,881 + Psyr_0619 0.29 -0.1 707,881 + Psyr_0619 0.29 -0.9 707,881 + Psyr_0619 0.29 +0.8 707,881 + Psyr_0619 0.29 +2.4 707,882 - Psyr_0619 0.29 +0.1 707,882 - Psyr_0619 0.29 -2.8 707,882 - Psyr_0619 0.29 -1.8 707,882 - Psyr_0619 0.29 +0.3 707,882 - Psyr_0619 0.29 +0.2 707,882 - Psyr_0619 0.29 -0.2 707,882 - Psyr_0619 0.29 -1.4 707,882 - Psyr_0619 0.29 -0.7 707,882 - Psyr_0619 0.29 -1.8 707,936 + Psyr_0619 0.34 +0.6 707,937 - Psyr_0619 0.34 +1.4 707,937 - Psyr_0619 0.34 -1.4 707,937 - Psyr_0619 0.34 +1.4 707,953 - Psyr_0619 0.36 -0.2 708,007 + Psyr_0619 0.41 -2.9 708,007 + Psyr_0619 0.41 +0.0 708,008 - Psyr_0619 0.41 -0.1 708,008 - Psyr_0619 0.41 +1.6 708,008 - Psyr_0619 0.41 +0.0 708,008 - Psyr_0619 0.41 +0.7 708,009 + Psyr_0619 0.41 -3.5 708,009 + Psyr_0619 0.41 +1.1 708,009 + Psyr_0619 0.41 -0.2 708,045 + Psyr_0619 0.44 +0.1 708,045 + Psyr_0619 0.44 -0.4 708,045 + Psyr_0619 0.44 +1.6 708,046 - Psyr_0619 0.45 +1.2 708,046 - Psyr_0619 0.45 +2.4 708,046 - Psyr_0619 0.45 -1.8 708,046 - Psyr_0619 0.45 -1.1 708,046 - Psyr_0619 0.45 -0.5 708,046 - Psyr_0619 0.45 +1.6 708,047 + Psyr_0619 0.45 -0.3 708,267 - Psyr_0619 0.66 +0.3 708,443 - Psyr_0619 0.83 -0.2 708,443 - Psyr_0619 0.83 +0.8 708,479 - Psyr_0619 0.86 -0.6 708,479 - Psyr_0619 0.86 -0.8 708,530 + +1.2 708,530 + +0.6 708,531 - +0.1 708,531 - +0.9 708,622 + -2.5 708,622 + +2.3 708,622 + -0.8 708,623 - +0.4 708,623 - +1.3 708,623 - +0.3 708,671 + +0.9 708,680 + +1.0 708,680 + -0.6 708,680 + -0.0 708,680 + +0.6 708,681 - +1.4 708,681 - -1.3 708,690 + +0.5 708,691 - -1.2 708,704 + +0.7 708,710 - -1.0 708,754 + +1.4 708,755 - -3.0 708,755 - -0.6 708,761 + -1.6 708,762 - +2.9 708,791 + -0.0 708,791 + +0.5 708,791 + +4.4 708,791 + +2.1 708,792 - -1.2 708,792 - -2.1 708,792 - -3.1 708,988 + -0.8 708,988 + -2.6 708,988 + -0.2 708,988 + -1.9 708,988 + +0.6 708,988 + -1.4 708,989 - +2.4 708,989 - -1.2 708,989 - +0.2 708,989 - -2.4 709,076 + Psyr_0620 0.11 -1.4 709,076 + Psyr_0620 0.11 -0.1 709,136 + Psyr_0620 0.14 +0.2 709,259 - Psyr_0620 0.19 +0.3 709,283 + Psyr_0620 0.20 +0.1 709,328 + Psyr_0620 0.22 +1.4 709,362 + Psyr_0620 0.24 +0.6 709,362 + Psyr_0620 0.24 +0.1 709,362 + Psyr_0620 0.24 +0.6 709,362 + Psyr_0620 0.24 +0.7 709,362 + Psyr_0620 0.24 +2.4 709,366 + Psyr_0620 0.24 +1.4 709,366 + Psyr_0620 0.24 +2.9 709,366 + Psyr_0620 0.24 +1.9 709,366 + Psyr_0620 0.24 -3.0 709,366 + Psyr_0620 0.24 +1.0 709,366 + Psyr_0620 0.24 -0.4 709,366 + Psyr_0620 0.24 +0.3 709,366 + Psyr_0620 0.24 -1.4 709,366 + Psyr_0620 0.24 -2.3 709,366 + Psyr_0620 0.24 +1.3 709,366 + Psyr_0620 0.24 +1.6 709,366 + Psyr_0620 0.24 -3.4 709,366 + Psyr_0620 0.24 +0.7 709,366 + Psyr_0620 0.24 +1.6 709,367 - Psyr_0620 0.24 -0.0 709,367 - Psyr_0620 0.24 +1.6 709,367 - Psyr_0620 0.24 +2.1 709,367 - Psyr_0620 0.24 -2.1 709,367 - Psyr_0620 0.24 +1.6 709,367 - Psyr_0620 0.24 -1.6 709,367 - Psyr_0620 0.24 -1.9 709,367 - Psyr_0620 0.24 -1.2 709,367 - Psyr_0620 0.24 +1.1 709,381 + Psyr_0620 0.25 -1.4 709,385 + Psyr_0620 0.25 -1.2 709,389 + Psyr_0620 0.25 +1.5 709,389 + Psyr_0620 0.25 -1.6 709,389 + Psyr_0620 0.25 -2.4 709,390 - Psyr_0620 0.25 +1.8 709,390 - Psyr_0620 0.25 -0.4 709,390 - Psyr_0620 0.25 -0.9 709,390 - Psyr_0620 0.25 +2.5 709,390 - Psyr_0620 0.25 -1.9 709,390 - Psyr_0620 0.25 -1.9 709,529 + Psyr_0620 0.31 -2.8 709,529 + Psyr_0620 0.31 +0.5 709,530 - Psyr_0620 0.31 -2.4 709,530 - Psyr_0620 0.31 +0.9 709,544 + Psyr_0620 0.32 +4.1 709,544 + Psyr_0620 0.32 -1.5 709,544 + Psyr_0620 0.32 +0.7 709,566 + Psyr_0620 0.33 +0.6 709,599 + Psyr_0620 0.34 -1.0
Or see this region's nucleotide sequence