Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0617

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0615 and Psyr_0616 overlap by 4 nucleotidesPsyr_0616 and Psyr_0617 are separated by 2 nucleotidesPsyr_0617 and Psyr_0618 overlap by 4 nucleotidesPsyr_0618 and Psyr_0619 are separated by 54 nucleotides Psyr_0615: Psyr_0615 - conserved hypothetical protein, at 704,107 to 704,829 _0615 Psyr_0616: Psyr_0616 - conserved domain protein, at 704,826 to 705,146 _0616 Psyr_0617: Psyr_0617 - conserved hypothetical protein, at 705,149 to 706,924 _0617 Psyr_0618: Psyr_0618 - conserved hypothetical protein, at 706,921 to 707,526 _0618 Psyr_0619: Psyr_0619 - WavE lipopolysaccharide synthesis, at 707,581 to 708,624 _0619 Position (kb) 705 706 707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.174 kb on - strandat 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.217 kb on - strand, within Psyr_0615at 704.232 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.527 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.928 kb on + strand, within Psyr_0616at 704.928 kb on + strand, within Psyr_0616at 704.928 kb on + strand, within Psyr_0616at 704.929 kb on - strand, within Psyr_0616at 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.188 kb on + strandat 705.189 kb on - strandat 705.189 kb on - strandat 705.192 kb on + strandat 705.228 kb on + strandat 705.338 kb on + strand, within Psyr_0617at 705.339 kb on - strand, within Psyr_0617at 705.349 kb on + strand, within Psyr_0617at 705.354 kb on - strand, within Psyr_0617at 705.354 kb on - strand, within Psyr_0617at 705.441 kb on + strand, within Psyr_0617at 705.474 kb on - strand, within Psyr_0617at 705.488 kb on + strand, within Psyr_0617at 705.489 kb on - strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.550 kb on - strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.685 kb on - strand, within Psyr_0617at 705.685 kb on - strand, within Psyr_0617at 705.685 kb on - strand, within Psyr_0617at 705.685 kb on - strand, within Psyr_0617at 705.710 kb on - strand, within Psyr_0617at 705.710 kb on - strand, within Psyr_0617at 705.720 kb on - strand, within Psyr_0617at 705.720 kb on - strand, within Psyr_0617at 706.050 kb on + strand, within Psyr_0617at 706.100 kb on + strand, within Psyr_0617at 706.100 kb on + strand, within Psyr_0617at 706.101 kb on - strand, within Psyr_0617at 706.136 kb on + strand, within Psyr_0617at 706.137 kb on - strand, within Psyr_0617at 706.199 kb on + strand, within Psyr_0617at 706.222 kb on - strand, within Psyr_0617at 706.241 kb on - strand, within Psyr_0617at 706.241 kb on - strand, within Psyr_0617at 706.253 kb on - strand, within Psyr_0617at 706.253 kb on - strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.358 kb on + strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.359 kb on - strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.442 kb on + strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.443 kb on - strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.711 kb on + strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.712 kb on - strand, within Psyr_0617at 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.763 kb on + strandat 706.764 kb on - strandat 706.764 kb on - strandat 706.764 kb on - strandat 706.764 kb on - strandat 706.764 kb on - strandat 706.828 kb on + strandat 706.829 kb on - strandat 706.844 kb on + strandat 706.880 kb on + strandat 706.881 kb on - strandat 706.904 kb on + strandat 706.904 kb on + strandat 706.904 kb on + strandat 706.905 kb on - strandat 706.928 kb on + strandat 706.929 kb on - strandat 707.044 kb on + strand, within Psyr_0618at 707.045 kb on - strand, within Psyr_0618at 707.170 kb on - strand, within Psyr_0618at 707.254 kb on + strand, within Psyr_0618at 707.255 kb on - strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.260 kb on + strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.261 kb on - strand, within Psyr_0618at 707.436 kb on - strand, within Psyr_0618at 707.436 kb on - strand, within Psyr_0618at 707.441 kb on + strand, within Psyr_0618at 707.442 kb on - strand, within Psyr_0618at 707.478 kb on - strandat 707.566 kb on + strandat 707.575 kb on - strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.580 kb on + strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.581 kb on - strandat 707.667 kb on + strandat 707.667 kb on + strandat 707.667 kb on + strandat 707.668 kb on - strandat 707.668 kb on - strandat 707.668 kb on - strandat 707.668 kb on - strandat 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.745 kb on + strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.746 kb on - strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.881 kb on + strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619at 707.882 kb on - strand, within Psyr_0619

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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704,173 + -0.8
704,173 + +1.0
704,173 + +0.3
704,173 + -1.8
704,173 + +0.6
704,174 - +0.2
704,185 + Psyr_0615 0.11 +1.5
704,185 + Psyr_0615 0.11 -0.6
704,185 + Psyr_0615 0.11 +2.7
704,186 - Psyr_0615 0.11 -0.4
704,186 - Psyr_0615 0.11 -1.2
704,208 + Psyr_0615 0.14 -1.0
704,208 + Psyr_0615 0.14 +0.6
704,208 + Psyr_0615 0.14 -0.6
704,209 - Psyr_0615 0.14 -0.9
704,209 - Psyr_0615 0.14 +1.3
704,209 - Psyr_0615 0.14 +0.5
704,209 - Psyr_0615 0.14 -2.0
704,209 - Psyr_0615 0.14 +1.6
704,209 - Psyr_0615 0.14 -1.7
704,216 + Psyr_0615 0.15 -1.1
704,216 + Psyr_0615 0.15 +2.6
704,216 + Psyr_0615 0.15 -2.1
704,217 - Psyr_0615 0.15 -0.5
704,232 - Psyr_0615 0.17 +0.7
704,334 - Psyr_0615 0.31 -1.2
704,334 - Psyr_0615 0.31 -1.0
704,459 + Psyr_0615 0.49 +0.6
704,459 + Psyr_0615 0.49 -3.5
704,460 - Psyr_0615 0.49 +0.9
704,460 - Psyr_0615 0.49 +1.0
704,460 - Psyr_0615 0.49 +0.7
704,460 - Psyr_0615 0.49 +0.5
704,460 - Psyr_0615 0.49 +1.6
704,527 + Psyr_0615 0.58 +0.9
704,695 + Psyr_0615 0.81 -1.6
704,695 + Psyr_0615 0.81 -3.0
704,695 + Psyr_0615 0.81 +0.3
704,695 + Psyr_0615 0.81 -1.7
704,696 - Psyr_0615 0.81 -0.9
704,696 - Psyr_0615 0.81 -0.6
704,696 - Psyr_0615 0.81 +1.0
704,696 - Psyr_0615 0.81 -0.4
704,696 - Psyr_0615 0.81 +1.0
704,699 + Psyr_0615 0.82 +1.7
704,699 + Psyr_0615 0.82 +2.1
704,699 + Psyr_0615 0.82 +1.8
704,700 - Psyr_0615 0.82 -3.7
704,700 - Psyr_0615 0.82 -2.3
704,700 - Psyr_0615 0.82 +0.0
704,928 + Psyr_0616 0.32 -0.4
704,928 + Psyr_0616 0.32 +0.5
704,928 + Psyr_0616 0.32 -1.2
704,929 - Psyr_0616 0.32 +1.6
705,135 + +1.6
705,135 + +0.1
705,135 + +1.0
705,135 + -0.7
705,135 + +0.5
705,135 + -1.9
705,135 + +0.1
705,136 - -1.0
705,136 - -2.4
705,136 - +3.5
705,136 - -3.6
705,136 - +1.4
705,136 - +1.8
705,188 + -2.2
705,189 - +2.3
705,189 - -2.1
705,192 + +0.7
705,228 + -1.7
705,338 + Psyr_0617 0.11 +0.4
705,339 - Psyr_0617 0.11 +0.2
705,349 + Psyr_0617 0.11 -2.0
705,354 - Psyr_0617 0.12 -0.5
705,354 - Psyr_0617 0.12 -0.1
705,441 + Psyr_0617 0.16 +2.3
705,474 - Psyr_0617 0.18 -3.8
705,488 + Psyr_0617 0.19 +1.4
705,489 - Psyr_0617 0.19 -0.0
705,539 + Psyr_0617 0.22 -1.9
705,540 - Psyr_0617 0.22 +1.9
705,540 - Psyr_0617 0.22 -0.7
705,540 - Psyr_0617 0.22 +1.0
705,550 - Psyr_0617 0.23 +1.2
705,684 + Psyr_0617 0.30 -1.6
705,684 + Psyr_0617 0.30 +0.7
705,684 + Psyr_0617 0.30 -1.6
705,684 + Psyr_0617 0.30 +0.0
705,685 - Psyr_0617 0.30 -0.4
705,685 - Psyr_0617 0.30 -0.8
705,685 - Psyr_0617 0.30 -0.2
705,685 - Psyr_0617 0.30 +1.3
705,710 - Psyr_0617 0.32 -0.5
705,710 - Psyr_0617 0.32 -1.7
705,720 - Psyr_0617 0.32 -1.2
705,720 - Psyr_0617 0.32 -1.2
706,050 + Psyr_0617 0.51 +0.6
706,100 + Psyr_0617 0.54 -0.2
706,100 + Psyr_0617 0.54 +1.1
706,101 - Psyr_0617 0.54 -1.0
706,136 + Psyr_0617 0.56 -0.2
706,137 - Psyr_0617 0.56 -0.1
706,199 + Psyr_0617 0.59 +3.3
706,222 - Psyr_0617 0.60 +2.7
706,241 - Psyr_0617 0.61 +1.1
706,241 - Psyr_0617 0.61 -2.4
706,253 - Psyr_0617 0.62 -2.1
706,253 - Psyr_0617 0.62 -1.1
706,358 + Psyr_0617 0.68 +2.5
706,358 + Psyr_0617 0.68 -1.2
706,358 + Psyr_0617 0.68 +3.2
706,358 + Psyr_0617 0.68 +0.2
706,358 + Psyr_0617 0.68 -0.5
706,358 + Psyr_0617 0.68 -0.7
706,358 + Psyr_0617 0.68 +0.3
706,358 + Psyr_0617 0.68 -1.4
706,358 + Psyr_0617 0.68 -1.4
706,358 + Psyr_0617 0.68 +1.6
706,358 + Psyr_0617 0.68 -3.1
706,359 - Psyr_0617 0.68 +0.5
706,359 - Psyr_0617 0.68 +0.3
706,359 - Psyr_0617 0.68 -1.0
706,359 - Psyr_0617 0.68 -1.1
706,359 - Psyr_0617 0.68 +1.4
706,359 - Psyr_0617 0.68 -1.6
706,359 - Psyr_0617 0.68 +2.6
706,442 + Psyr_0617 0.73 -1.7
706,442 + Psyr_0617 0.73 -0.3
706,442 + Psyr_0617 0.73 -1.7
706,442 + Psyr_0617 0.73 +0.2
706,442 + Psyr_0617 0.73 +0.6
706,443 - Psyr_0617 0.73 +0.6
706,443 - Psyr_0617 0.73 -2.1
706,443 - Psyr_0617 0.73 -0.4
706,443 - Psyr_0617 0.73 -2.2
706,711 + Psyr_0617 0.88 +1.9
706,711 + Psyr_0617 0.88 +0.2
706,711 + Psyr_0617 0.88 -0.8
706,711 + Psyr_0617 0.88 +0.0
706,711 + Psyr_0617 0.88 -3.4
706,712 - Psyr_0617 0.88 -0.0
706,712 - Psyr_0617 0.88 -0.8
706,712 - Psyr_0617 0.88 -2.2
706,712 - Psyr_0617 0.88 +1.9
706,712 - Psyr_0617 0.88 +7.1
706,712 - Psyr_0617 0.88 +1.6
706,712 - Psyr_0617 0.88 -2.4
706,763 + +2.6
706,763 + -0.3
706,763 + -2.1
706,763 + -0.8
706,763 + -1.4
706,764 - -1.0
706,764 - -1.8
706,764 - +1.5
706,764 - +1.0
706,764 - +1.3
706,828 + -3.2
706,829 - -3.0
706,844 + -0.0
706,880 + -0.8
706,881 - +0.4
706,904 + -1.0
706,904 + -2.4
706,904 + -1.9
706,905 - +0.8
706,928 + -2.5
706,929 - +2.3
707,044 + Psyr_0618 0.20 +1.6
707,045 - Psyr_0618 0.20 +0.2
707,170 - Psyr_0618 0.41 +0.6
707,254 + Psyr_0618 0.55 -3.0
707,255 - Psyr_0618 0.55 -2.4
707,260 + Psyr_0618 0.56 -0.9
707,260 + Psyr_0618 0.56 +0.1
707,260 + Psyr_0618 0.56 -1.0
707,260 + Psyr_0618 0.56 -1.0
707,260 + Psyr_0618 0.56 -1.2
707,261 - Psyr_0618 0.56 +1.4
707,261 - Psyr_0618 0.56 -0.2
707,261 - Psyr_0618 0.56 -0.4
707,261 - Psyr_0618 0.56 +0.7
707,261 - Psyr_0618 0.56 +0.3
707,261 - Psyr_0618 0.56 -0.0
707,261 - Psyr_0618 0.56 +2.9
707,261 - Psyr_0618 0.56 -0.8
707,436 - Psyr_0618 0.85 -0.8
707,436 - Psyr_0618 0.85 +1.8
707,441 + Psyr_0618 0.86 -2.5
707,442 - Psyr_0618 0.86 -2.4
707,478 - +2.6
707,566 + +0.7
707,575 - +1.2
707,580 + -2.3
707,580 + +1.2
707,580 + +0.6
707,580 + +1.4
707,580 + -2.9
707,580 + +0.6
707,580 + +1.3
707,580 + +1.2
707,580 + +0.3
707,581 - -0.8
707,581 - +0.9
707,581 - -1.4
707,581 - +1.6
707,581 - -0.9
707,581 - +0.2
707,581 - +0.9
707,581 - -2.1
707,581 - +1.2
707,581 - -1.6
707,667 + +1.4
707,667 + -1.6
707,667 + +1.6
707,668 - -2.4
707,668 - -3.6
707,668 - -0.4
707,668 - +0.5
707,745 + Psyr_0619 0.16 -0.0
707,745 + Psyr_0619 0.16 -1.6
707,745 + Psyr_0619 0.16 +1.1
707,745 + Psyr_0619 0.16 -1.2
707,745 + Psyr_0619 0.16 -0.7
707,745 + Psyr_0619 0.16 -1.0
707,745 + Psyr_0619 0.16 +0.3
707,746 - Psyr_0619 0.16 -3.0
707,746 - Psyr_0619 0.16 +0.6
707,746 - Psyr_0619 0.16 +1.0
707,746 - Psyr_0619 0.16 -0.0
707,746 - Psyr_0619 0.16 +2.9
707,746 - Psyr_0619 0.16 -2.2
707,746 - Psyr_0619 0.16 -0.4
707,746 - Psyr_0619 0.16 +1.2
707,881 + Psyr_0619 0.29 -1.1
707,881 + Psyr_0619 0.29 -0.1
707,881 + Psyr_0619 0.29 -0.9
707,881 + Psyr_0619 0.29 +0.8
707,881 + Psyr_0619 0.29 +2.4
707,882 - Psyr_0619 0.29 +0.1
707,882 - Psyr_0619 0.29 -2.8
707,882 - Psyr_0619 0.29 -1.8
707,882 - Psyr_0619 0.29 +0.3
707,882 - Psyr_0619 0.29 +0.2
707,882 - Psyr_0619 0.29 -0.2
707,882 - Psyr_0619 0.29 -1.4
707,882 - Psyr_0619 0.29 -0.7
707,882 - Psyr_0619 0.29 -1.8

Or see this region's nucleotide sequence