Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0575 and Psyr_0576 are separated by 270 nucleotides Psyr_0576 and Psyr_0577 are separated by 54 nucleotides
Psyr_0575: Psyr_0575 - protease FtsH subunit HflC, at 653,492 to 654,361
_0575
Psyr_0576: Psyr_0576 - ATP phosphoribosyltransferase regulatory subunit, putative, at 654,632 to 655,819
_0576
Psyr_0577: Psyr_0577 - Adenylosuccinate synthetase, at 655,874 to 657,166
_0577
Position (kb) 654
655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 654.043 kb on + strand, within Psyr_0575 at 654.043 kb on + strand, within Psyr_0575 at 654.043 kb on + strand, within Psyr_0575 at 654.212 kb on + strand, within Psyr_0575 at 654.213 kb on - strand, within Psyr_0575 at 654.224 kb on + strand, within Psyr_0575 at 654.224 kb on + strand, within Psyr_0575 at 654.225 kb on - strand, within Psyr_0575 at 654.359 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.364 kb on - strand at 654.405 kb on + strand at 654.405 kb on + strand at 654.405 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.421 kb on + strand at 654.479 kb on + strand at 654.597 kb on + strand at 654.678 kb on + strand at 654.678 kb on + strand at 654.678 kb on + strand at 654.678 kb on + strand at 654.708 kb on + strand at 654.779 kb on + strand, within Psyr_0576 at 654.779 kb on + strand, within Psyr_0576 at 654.779 kb on + strand, within Psyr_0576 at 654.901 kb on + strand, within Psyr_0576 at 654.947 kb on + strand, within Psyr_0576 at 655.136 kb on + strand, within Psyr_0576 at 655.421 kb on + strand, within Psyr_0576 at 655.421 kb on + strand, within Psyr_0576 at 655.421 kb on + strand, within Psyr_0576 at 655.623 kb on + strand, within Psyr_0576 at 655.623 kb on + strand, within Psyr_0576 at 655.654 kb on + strand, within Psyr_0576 at 655.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 654,043 + Psyr_0575 0.63 -1.2 654,043 + Psyr_0575 0.63 +0.7 654,043 + Psyr_0575 0.63 +1.7 654,212 + Psyr_0575 0.83 -1.1 654,213 - Psyr_0575 0.83 +0.1 654,224 + Psyr_0575 0.84 -1.5 654,224 + Psyr_0575 0.84 -1.3 654,225 - Psyr_0575 0.84 +0.1 654,359 + +0.4 654,363 + -1.5 654,363 + -1.8 654,364 - +0.5 654,405 + +2.8 654,405 + +0.4 654,405 + -3.0 654,421 + +1.1 654,421 + +1.7 654,421 + -2.3 654,479 + -1.1 654,597 + -1.9 654,678 + -2.7 654,678 + +0.1 654,678 + -2.5 654,678 + -2.5 654,708 + -4.2 654,779 + Psyr_0576 0.12 -1.3 654,779 + Psyr_0576 0.12 -1.9 654,779 + Psyr_0576 0.12 -1.1 654,901 + Psyr_0576 0.23 -2.7 654,947 + Psyr_0576 0.27 -0.5 655,136 + Psyr_0576 0.42 -4.6 655,421 + Psyr_0576 0.66 -1.5 655,421 + Psyr_0576 0.66 +0.7 655,421 + Psyr_0576 0.66 -0.0 655,623 + Psyr_0576 0.83 -2.9 655,623 + Psyr_0576 0.83 -0.2 655,654 + Psyr_0576 0.86 -2.2 655,821 + -2.6
Or see this region's nucleotide sequence