Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0518 and Psyr_0519 are separated by 384 nucleotides Psyr_0519 and Psyr_0520 are separated by 129 nucleotides
Psyr_0518: Psyr_0518 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 576,281 to 578,926
_0518
Psyr_0519: Psyr_0519 - Glutamate-ammonia-ligase adenylyltransferase, at 579,311 to 582,268
_0519
Psyr_0520: Psyr_0520 - Glycosyl transferase, family 9, at 582,398 to 583,432
_0520
Position (kb) 579
580
581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 579.041 kb on - strand at 579.092 kb on + strand at 579.095 kb on + strand at 579.096 kb on - strand at 579.101 kb on + strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.318 kb on + strand at 579.319 kb on - strand at 579.319 kb on - strand at 579.556 kb on + strand at 579.557 kb on - strand at 579.634 kb on + strand, within Psyr_0519 at 579.634 kb on + strand, within Psyr_0519 at 579.640 kb on - strand, within Psyr_0519 at 579.640 kb on - strand, within Psyr_0519 at 579.666 kb on + strand, within Psyr_0519 at 579.761 kb on + strand, within Psyr_0519 at 579.762 kb on - strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.774 kb on - strand, within Psyr_0519 at 579.774 kb on - strand, within Psyr_0519 at 580.106 kb on + strand, within Psyr_0519 at 580.106 kb on + strand, within Psyr_0519 at 580.106 kb on + strand, within Psyr_0519 at 580.107 kb on - strand, within Psyr_0519 at 580.109 kb on + strand, within Psyr_0519 at 580.109 kb on + strand, within Psyr_0519 at 580.109 kb on + strand, within Psyr_0519 at 580.110 kb on - strand, within Psyr_0519 at 580.110 kb on - strand, within Psyr_0519 at 580.637 kb on + strand, within Psyr_0519 at 580.638 kb on - strand, within Psyr_0519 at 580.638 kb on - strand, within Psyr_0519 at 580.638 kb on - strand, within Psyr_0519 at 581.324 kb on + strand, within Psyr_0519 at 581.639 kb on + strand, within Psyr_0519 at 581.639 kb on + strand, within Psyr_0519 at 581.640 kb on - strand, within Psyr_0519 at 581.640 kb on - strand, within Psyr_0519 at 581.640 kb on - strand, within Psyr_0519 at 581.640 kb on - strand, within Psyr_0519 at 581.640 kb on - strand, within Psyr_0519 at 581.983 kb on + strand at 582.001 kb on + strand at 582.001 kb on + strand at 582.001 kb on + strand at 582.001 kb on + strand at 582.056 kb on + strand at 582.056 kb on + strand at 582.056 kb on + strand at 582.140 kb on + strand at 582.140 kb on + strand at 582.304 kb on + strand at 582.304 kb on + strand at 582.306 kb on + strand at 582.306 kb on + strand at 582.312 kb on + strand at 582.312 kb on + strand at 582.312 kb on + strand at 582.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 579,041 - -2.0 579,092 + +0.6 579,095 + -1.6 579,096 - +1.2 579,101 + -1.4 579,102 - +0.6 579,102 - +0.8 579,318 + +0.2 579,319 - -1.2 579,319 - -0.9 579,556 + +2.0 579,557 - +1.0 579,634 + Psyr_0519 0.11 -0.0 579,634 + Psyr_0519 0.11 -2.7 579,640 - Psyr_0519 0.11 +1.6 579,640 - Psyr_0519 0.11 -1.5 579,666 + Psyr_0519 0.12 -1.2 579,761 + Psyr_0519 0.15 +0.1 579,762 - Psyr_0519 0.15 +0.8 579,773 + Psyr_0519 0.16 -0.1 579,773 + Psyr_0519 0.16 -1.2 579,773 + Psyr_0519 0.16 -0.2 579,774 - Psyr_0519 0.16 -3.3 579,774 - Psyr_0519 0.16 +0.4 580,106 + Psyr_0519 0.27 -2.7 580,106 + Psyr_0519 0.27 +1.1 580,106 + Psyr_0519 0.27 +0.8 580,107 - Psyr_0519 0.27 +1.0 580,109 + Psyr_0519 0.27 -1.5 580,109 + Psyr_0519 0.27 -0.7 580,109 + Psyr_0519 0.27 +2.2 580,110 - Psyr_0519 0.27 +0.3 580,110 - Psyr_0519 0.27 +0.2 580,637 + Psyr_0519 0.45 +1.3 580,638 - Psyr_0519 0.45 +1.3 580,638 - Psyr_0519 0.45 +1.5 580,638 - Psyr_0519 0.45 +0.4 581,324 + Psyr_0519 0.68 +1.8 581,639 + Psyr_0519 0.79 +1.8 581,639 + Psyr_0519 0.79 +0.2 581,640 - Psyr_0519 0.79 -2.4 581,640 - Psyr_0519 0.79 -0.7 581,640 - Psyr_0519 0.79 -1.3 581,640 - Psyr_0519 0.79 +2.1 581,640 - Psyr_0519 0.79 -0.2 581,983 + +1.3 582,001 + +1.4 582,001 + +0.8 582,001 + +0.2 582,001 + +0.3 582,056 + +0.9 582,056 + -0.5 582,056 + +0.8 582,140 + +0.8 582,140 + -2.2 582,304 + +2.2 582,304 + +0.2 582,306 + +0.2 582,306 + +0.0 582,312 + -0.6 582,312 + +1.7 582,312 + +1.8 582,312 + -0.0
Or see this region's nucleotide sequence