Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0462

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0460 and Psyr_0461 are separated by 354 nucleotidesPsyr_0461 and Psyr_0462 are separated by 152 nucleotidesPsyr_0462 and Psyr_0463 are separated by 22 nucleotides Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589 _0460 Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339 _0461 Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277 _0462 Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757 _0463 Position (kb) 500 501 502Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 499.746 kb on + strandat 499.746 kb on + strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.775 kb on - strandat 499.816 kb on + strandat 499.844 kb on + strandat 499.847 kb on + strandat 499.848 kb on - strandat 499.867 kb on + strandat 499.915 kb on - strandat 500.049 kb on + strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.070 kb on - strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.200 kb on + strand, within Psyr_0461at 500.201 kb on - strand, within Psyr_0461at 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.376 kb on + strandat 500.417 kb on + strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.480 kb on + strandat 500.580 kb on + strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 501.001 kb on - strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.159 kb on + strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.177 kb on + strand, within Psyr_0462at 501.177 kb on + strand, within Psyr_0462at 501.178 kb on - strand, within Psyr_0462at 501.280 kb on + strandat 501.280 kb on + strandat 501.280 kb on + strandat 501.663 kb on + strand, within Psyr_0463at 501.663 kb on + strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.693 kb on + strand, within Psyr_0463at 501.771 kb on - strand, within Psyr_0463at 501.771 kb on - strand, within Psyr_0463at 501.853 kb on - strand, within Psyr_0463at 502.111 kb on + strand, within Psyr_0463

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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499,746 + -2.2
499,746 + +0.9
499,747 - +0.9
499,747 - +1.9
499,747 - +2.4
499,747 - +0.3
499,775 - -0.9
499,816 + +3.9
499,844 + +0.8
499,847 + -2.5
499,848 - +0.2
499,867 + -0.9
499,915 - -0.0
500,049 + Psyr_0461 0.27 +0.9
500,050 - Psyr_0461 0.27 +0.2
500,050 - Psyr_0461 0.27 +0.3
500,070 - Psyr_0461 0.32 -0.5
500,091 + Psyr_0461 0.37 +3.3
500,091 + Psyr_0461 0.37 +1.7
500,091 + Psyr_0461 0.37 +2.4
500,091 + Psyr_0461 0.37 +2.2
500,091 + Psyr_0461 0.37 -0.2
500,091 + Psyr_0461 0.37 +1.4
500,091 + Psyr_0461 0.37 -2.4
500,091 + Psyr_0461 0.37 +0.3
500,091 + Psyr_0461 0.37 -0.1
500,091 + Psyr_0461 0.37 -1.7
500,091 + Psyr_0461 0.37 +2.4
500,091 + Psyr_0461 0.37 -2.0
500,091 + Psyr_0461 0.37 +1.5
500,091 + Psyr_0461 0.37 -0.7
500,092 - Psyr_0461 0.37 +0.7
500,092 - Psyr_0461 0.37 -2.5
500,092 - Psyr_0461 0.37 -2.6
500,092 - Psyr_0461 0.37 +0.8
500,092 - Psyr_0461 0.37 +1.3
500,092 - Psyr_0461 0.37 +0.4
500,092 - Psyr_0461 0.37 +0.3
500,092 - Psyr_0461 0.37 +0.8
500,092 - Psyr_0461 0.37 +1.1
500,092 - Psyr_0461 0.37 +0.4
500,092 - Psyr_0461 0.37 -4.3
500,092 - Psyr_0461 0.37 +2.4
500,092 - Psyr_0461 0.37 -0.5
500,092 - Psyr_0461 0.37 -2.7
500,092 - Psyr_0461 0.37 +1.1
500,200 + Psyr_0461 0.65 -2.5
500,201 - Psyr_0461 0.65 -0.3
500,330 - +0.7
500,330 - -1.9
500,330 - +0.9
500,330 - +0.2
500,376 + -2.4
500,417 + -1.7
500,418 - +0.3
500,418 - -0.4
500,418 - -0.2
500,480 + +1.3
500,580 + Psyr_0462 0.11 +4.7
500,617 - Psyr_0462 0.16 +0.8
500,914 - Psyr_0462 0.54 +2.4
500,914 - Psyr_0462 0.54 +0.5
500,914 - Psyr_0462 0.54 -2.0
501,001 - Psyr_0462 0.65 +0.3
501,159 + Psyr_0462 0.85 +0.3
501,159 + Psyr_0462 0.85 +0.4
501,159 + Psyr_0462 0.85 +1.7
501,160 - Psyr_0462 0.85 -0.1
501,160 - Psyr_0462 0.85 +6.6
501,160 - Psyr_0462 0.85 +2.1
501,160 - Psyr_0462 0.85 +0.9
501,160 - Psyr_0462 0.85 -0.7
501,177 + Psyr_0462 0.87 +1.3
501,177 + Psyr_0462 0.87 +1.9
501,178 - Psyr_0462 0.87 +0.7
501,280 + +0.2
501,280 + -3.5
501,280 + -2.3
501,663 + Psyr_0463 0.25 -0.7
501,663 + Psyr_0463 0.25 +0.4
501,664 - Psyr_0463 0.25 -2.8
501,664 - Psyr_0463 0.25 -2.4
501,664 - Psyr_0463 0.25 +0.2
501,664 - Psyr_0463 0.25 -3.6
501,664 - Psyr_0463 0.25 +1.1
501,664 - Psyr_0463 0.25 +1.9
501,664 - Psyr_0463 0.25 +2.2
501,693 + Psyr_0463 0.27 -2.4
501,771 - Psyr_0463 0.32 -0.2
501,771 - Psyr_0463 0.32 -2.3
501,853 - Psyr_0463 0.38 -0.6
502,111 + Psyr_0463 0.56 -0.7

Or see this region's nucleotide sequence