Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0460

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0459 and Psyr_0460 are separated by 189 nucleotidesPsyr_0460 and Psyr_0461 are separated by 354 nucleotidesPsyr_0461 and Psyr_0462 are separated by 152 nucleotides Psyr_0459: Psyr_0459 - 5,10-methylenetetrahydrofolate reductase, at 497,145 to 497,990 _0459 Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589 _0460 Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339 _0461 Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277 _0462 Position (kb) 498 499 500Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.479 kb on + strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.829 kb on - strand, within Psyr_0459at 497.829 kb on - strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 498.014 kb on - strandat 498.014 kb on - strandat 498.024 kb on + strandat 498.024 kb on + strandat 498.024 kb on + strandat 498.025 kb on - strandat 498.044 kb on + strandat 498.045 kb on - strandat 498.045 kb on - strandat 498.045 kb on - strandat 498.045 kb on - strandat 498.087 kb on + strandat 498.087 kb on + strandat 498.090 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.175 kb on - strandat 498.175 kb on - strandat 498.178 kb on + strandat 498.178 kb on + strandat 498.178 kb on + strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 499.746 kb on + strandat 499.746 kb on + strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.775 kb on - strandat 499.816 kb on + strandat 499.844 kb on + strandat 499.847 kb on + strandat 499.848 kb on - strandat 499.867 kb on + strandat 499.915 kb on - strandat 500.049 kb on + strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.050 kb on - strand, within Psyr_0461at 500.070 kb on - strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.200 kb on + strand, within Psyr_0461at 500.201 kb on - strand, within Psyr_0461at 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.330 kb on - strandat 500.376 kb on + strandat 500.417 kb on + strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.480 kb on + strandat 500.580 kb on + strand, within Psyr_0462

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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497,380 + Psyr_0459 0.28 -1.2
497,380 + Psyr_0459 0.28 +2.1
497,380 + Psyr_0459 0.28 -0.1
497,381 - Psyr_0459 0.28 +0.4
497,381 - Psyr_0459 0.28 +3.1
497,381 - Psyr_0459 0.28 +1.9
497,381 - Psyr_0459 0.28 +1.5
497,381 - Psyr_0459 0.28 +1.3
497,381 - Psyr_0459 0.28 +0.9
497,458 + Psyr_0459 0.37 -1.7
497,458 + Psyr_0459 0.37 +1.8
497,458 + Psyr_0459 0.37 -0.9
497,458 + Psyr_0459 0.37 +1.5
497,458 + Psyr_0459 0.37 -0.1
497,459 - Psyr_0459 0.37 +0.6
497,459 - Psyr_0459 0.37 +0.1
497,459 - Psyr_0459 0.37 -3.4
497,459 - Psyr_0459 0.37 -0.7
497,459 - Psyr_0459 0.37 -0.2
497,459 - Psyr_0459 0.37 +5.4
497,459 - Psyr_0459 0.37 -0.1
497,459 - Psyr_0459 0.37 +0.6
497,459 - Psyr_0459 0.37 -0.9
497,459 - Psyr_0459 0.37 -3.0
497,479 + Psyr_0459 0.39 +3.9
497,480 - Psyr_0459 0.40 +0.8
497,480 - Psyr_0459 0.40 +3.0
497,480 - Psyr_0459 0.40 -1.3
497,480 - Psyr_0459 0.40 +1.2
497,728 + Psyr_0459 0.69 +0.2
497,728 + Psyr_0459 0.69 +0.6
497,728 + Psyr_0459 0.69 -0.8
497,728 + Psyr_0459 0.69 +1.1
497,728 + Psyr_0459 0.69 -1.2
497,829 - Psyr_0459 0.81 +0.2
497,829 - Psyr_0459 0.81 +3.1
497,866 + Psyr_0459 0.85 -1.4
497,866 + Psyr_0459 0.85 -3.1
497,866 + Psyr_0459 0.85 +3.5
497,867 - Psyr_0459 0.85 +1.0
497,867 - Psyr_0459 0.85 +1.4
497,867 - Psyr_0459 0.85 -1.2
497,867 - Psyr_0459 0.85 -0.2
497,867 - Psyr_0459 0.85 -2.2
497,867 - Psyr_0459 0.85 -2.0
497,867 - Psyr_0459 0.85 -1.1
497,893 + Psyr_0459 0.88 +0.6
497,893 + Psyr_0459 0.88 +0.5
497,893 + Psyr_0459 0.88 +1.9
497,894 - Psyr_0459 0.89 +1.5
497,894 - Psyr_0459 0.89 +1.7
497,894 - Psyr_0459 0.89 -2.1
497,894 - Psyr_0459 0.89 +0.3
497,894 - Psyr_0459 0.89 +0.5
497,894 - Psyr_0459 0.89 +3.0
497,894 - Psyr_0459 0.89 -0.1
497,894 - Psyr_0459 0.89 +0.7
497,894 - Psyr_0459 0.89 +1.3
498,014 - -0.2
498,014 - +0.8
498,024 + -0.2
498,024 + -1.1
498,024 + -1.2
498,025 - +2.2
498,044 + -0.2
498,045 - -1.4
498,045 - -0.3
498,045 - -0.4
498,045 - -1.7
498,087 + +1.2
498,087 + +1.9
498,090 + +1.2
498,174 + +1.0
498,174 + +1.8
498,174 + +0.6
498,175 - -3.3
498,175 - -1.8
498,178 + -1.1
498,178 + -1.8
498,178 + -1.9
498,179 - +0.8
498,179 - -2.0
498,179 - -0.7
498,179 - -0.5
499,746 + -2.2
499,746 + +0.9
499,747 - +0.9
499,747 - +1.9
499,747 - +2.4
499,747 - +0.3
499,775 - -0.9
499,816 + +3.9
499,844 + +0.8
499,847 + -2.5
499,848 - +0.2
499,867 + -0.9
499,915 - -0.0
500,049 + Psyr_0461 0.27 +0.9
500,050 - Psyr_0461 0.27 +0.2
500,050 - Psyr_0461 0.27 +0.3
500,070 - Psyr_0461 0.32 -0.5
500,091 + Psyr_0461 0.37 +3.3
500,091 + Psyr_0461 0.37 +1.7
500,091 + Psyr_0461 0.37 +2.4
500,091 + Psyr_0461 0.37 +2.2
500,091 + Psyr_0461 0.37 -0.2
500,091 + Psyr_0461 0.37 +1.4
500,091 + Psyr_0461 0.37 -2.4
500,091 + Psyr_0461 0.37 +0.3
500,091 + Psyr_0461 0.37 -0.1
500,091 + Psyr_0461 0.37 -1.7
500,091 + Psyr_0461 0.37 +2.4
500,091 + Psyr_0461 0.37 -2.0
500,091 + Psyr_0461 0.37 +1.5
500,091 + Psyr_0461 0.37 -0.7
500,092 - Psyr_0461 0.37 +0.7
500,092 - Psyr_0461 0.37 -2.5
500,092 - Psyr_0461 0.37 -2.6
500,092 - Psyr_0461 0.37 +0.8
500,092 - Psyr_0461 0.37 +1.3
500,092 - Psyr_0461 0.37 +0.4
500,092 - Psyr_0461 0.37 +0.3
500,092 - Psyr_0461 0.37 +0.8
500,092 - Psyr_0461 0.37 +1.1
500,092 - Psyr_0461 0.37 +0.4
500,092 - Psyr_0461 0.37 -4.3
500,092 - Psyr_0461 0.37 +2.4
500,092 - Psyr_0461 0.37 -0.5
500,092 - Psyr_0461 0.37 -2.7
500,092 - Psyr_0461 0.37 +1.1
500,200 + Psyr_0461 0.65 -2.5
500,201 - Psyr_0461 0.65 -0.3
500,330 - +0.7
500,330 - -1.9
500,330 - +0.9
500,330 - +0.2
500,376 + -2.4
500,417 + -1.7
500,418 - +0.3
500,418 - -0.4
500,418 - -0.2
500,480 + +1.3
500,580 + Psyr_0462 0.11 +4.7

Or see this region's nucleotide sequence