Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0434 and Psyr_0435 are separated by 1 nucleotides Psyr_0435 and Psyr_0436 overlap by 4 nucleotides Psyr_0436 and Psyr_0437 are separated by 9 nucleotides Psyr_0437 and Psyr_0438 overlap by 26 nucleotides Psyr_0438 and Psyr_0439 overlap by 25 nucleotides
Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479
_0434
Psyr_0435: Psyr_0435 - membrane protein, putative, at 474,481 to 475,026
_0435
Psyr_0436: Psyr_0436 - Phosphopantetheine-binding protein, at 475,023 to 475,277
_0436
Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547
_0437
Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334
_0438
Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029
_0439
Position (kb) 475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 474.566 kb on + strand, within Psyr_0435 at 474.567 kb on - strand, within Psyr_0435 at 474.669 kb on - strand, within Psyr_0435 at 474.737 kb on + strand, within Psyr_0435 at 474.738 kb on - strand, within Psyr_0435 at 474.965 kb on + strand, within Psyr_0435 at 474.965 kb on + strand, within Psyr_0435 at 475.049 kb on - strand, within Psyr_0436 at 475.049 kb on - strand, within Psyr_0436 at 475.059 kb on + strand, within Psyr_0436 at 475.059 kb on + strand, within Psyr_0436 at 475.059 kb on + strand, within Psyr_0436 at 475.060 kb on - strand, within Psyr_0436 at 475.060 kb on - strand, within Psyr_0436 at 475.460 kb on + strand, within Psyr_0437 at 475.460 kb on + strand, within Psyr_0437 at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.524 kb on - strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.572 kb on - strand at 475.572 kb on - strand at 475.572 kb on - strand at 475.583 kb on + strand at 475.621 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.920 kb on - strand, within Psyr_0438 at 475.920 kb on - strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.093 kb on + strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.094 kb on - strand, within Psyr_0438 at 476.288 kb on + strand at 476.288 kb on + strand at 476.288 kb on + strand at 476.288 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.291 kb on + strand at 476.292 kb on - strand at 476.527 kb on + strand, within Psyr_0439 at 476.527 kb on + strand, within Psyr_0439 at 476.528 kb on - strand, within Psyr_0439 at 476.528 kb on - strand, within Psyr_0439
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 474,566 + Psyr_0435 0.16 -2.2 474,567 - Psyr_0435 0.16 +0.2 474,669 - Psyr_0435 0.34 +1.0 474,737 + Psyr_0435 0.47 +0.5 474,738 - Psyr_0435 0.47 -1.2 474,965 + Psyr_0435 0.89 +2.0 474,965 + Psyr_0435 0.89 +1.6 475,049 - Psyr_0436 0.10 -0.9 475,049 - Psyr_0436 0.10 -0.3 475,059 + Psyr_0436 0.14 -2.1 475,059 + Psyr_0436 0.14 -1.8 475,059 + Psyr_0436 0.14 -0.6 475,060 - Psyr_0436 0.15 -2.1 475,060 - Psyr_0436 0.15 +1.2 475,460 + Psyr_0437 0.66 +0.3 475,460 + Psyr_0437 0.66 +1.8 475,523 + +2.6 475,523 + -0.1 475,523 + +2.1 475,524 - +1.6 475,571 + +0.2 475,571 + +0.4 475,571 + -0.8 475,571 + +1.6 475,571 + -2.0 475,572 - -2.1 475,572 - -0.9 475,572 - +0.5 475,583 + -2.8 475,621 + Psyr_0438 0.12 +0.7 475,645 + Psyr_0438 0.15 +1.2 475,645 + Psyr_0438 0.15 -1.4 475,646 - Psyr_0438 0.15 -1.7 475,646 - Psyr_0438 0.15 -2.5 475,646 - Psyr_0438 0.15 -0.5 475,920 - Psyr_0438 0.49 -1.6 475,920 - Psyr_0438 0.49 -0.8 476,093 + Psyr_0438 0.70 -0.7 476,093 + Psyr_0438 0.70 +0.6 476,093 + Psyr_0438 0.70 +0.1 476,093 + Psyr_0438 0.70 -1.0 476,093 + Psyr_0438 0.70 -0.0 476,093 + Psyr_0438 0.70 +0.9 476,094 - Psyr_0438 0.70 -2.7 476,094 - Psyr_0438 0.70 +1.6 476,094 - Psyr_0438 0.70 -2.6 476,094 - Psyr_0438 0.70 +0.2 476,094 - Psyr_0438 0.70 +2.0 476,288 + -0.2 476,288 + +0.3 476,288 + -1.2 476,288 + +0.4 476,291 + +1.8 476,291 + -0.0 476,291 + +0.5 476,291 + +0.7 476,292 - -2.2 476,527 + Psyr_0439 0.30 +0.6 476,527 + Psyr_0439 0.30 +0.1 476,528 - Psyr_0439 0.30 -2.1 476,528 - Psyr_0439 0.30 +1.4
Or see this region's nucleotide sequence