Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0317

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0314 and Psyr_0315 are separated by 6 nucleotidesPsyr_0315 and Psyr_0316 are separated by 193 nucleotidesPsyr_0316 and Psyr_0317 are separated by 45 nucleotidesPsyr_0317 and Psyr_0318 are separated by 303 nucleotidesPsyr_0318 and Psyr_0319 overlap by 4 nucleotidesPsyr_0319 and Psyr_0320 are separated by 150 nucleotides Psyr_0314: Psyr_0314 - Flagellar basal body-associated protein FliL, at 334,005 to 334,412 _0314 Psyr_0315: Psyr_0315 - Protein of unknown function DUF589, at 334,419 to 334,868 _0315 Psyr_0316: Psyr_0316 - conserved hypothetical protein, at 335,062 to 335,214 _0316 Psyr_0317: Psyr_0317 - 5-formyltetrahydrofolate cyclo-ligase, at 335,260 to 335,871 _0317 Psyr_0318: Psyr_0318 - cell division protein ZapA, at 336,175 to 336,504 _0318 Psyr_0319: Psyr_0319 - conserved hypothetical protein, at 336,501 to 336,710 _0319 Psyr_0320: Psyr_0320 - Protein of unknown function UPF0149, at 336,861 to 337,430 _0320 Position (kb) 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 334.531 kb on + strand, within Psyr_0315at 334.559 kb on + strand, within Psyr_0315at 334.774 kb on + strand, within Psyr_0315at 334.774 kb on + strand, within Psyr_0315at 334.775 kb on - strand, within Psyr_0315at 334.861 kb on + strandat 334.862 kb on - strandat 334.895 kb on + strandat 334.945 kb on + strandat 334.945 kb on + strandat 334.945 kb on + strandat 334.946 kb on - strandat 334.946 kb on - strandat 334.953 kb on + strandat 335.012 kb on - strandat 335.081 kb on + strand, within Psyr_0316at 335.081 kb on + strand, within Psyr_0316at 335.081 kb on + strand, within Psyr_0316at 335.225 kb on + strandat 335.225 kb on + strandat 335.226 kb on - strandat 335.279 kb on + strandat 335.279 kb on + strandat 335.279 kb on + strandat 335.279 kb on + strandat 335.279 kb on + strandat 335.279 kb on + strandat 335.280 kb on - strandat 335.280 kb on - strandat 335.280 kb on - strandat 335.280 kb on - strandat 335.314 kb on + strandat 335.314 kb on + strandat 335.411 kb on + strand, within Psyr_0317at 335.411 kb on + strand, within Psyr_0317at 335.429 kb on + strand, within Psyr_0317at 335.429 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.712 kb on - strand, within Psyr_0317at 335.770 kb on - strand, within Psyr_0317at 335.770 kb on - strand, within Psyr_0317at 335.770 kb on - strand, within Psyr_0317at 335.824 kb on + strandat 336.039 kb on - strandat 336.152 kb on + strandat 336.154 kb on + strandat 336.155 kb on - strandat 336.155 kb on - strandat 336.155 kb on - strandat 336.173 kb on - strandat 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.458 kb on + strand, within Psyr_0318at 336.524 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.655 kb on + strand, within Psyr_0319at 336.656 kb on - strand, within Psyr_0319at 336.725 kb on + strandat 336.726 kb on - strandat 336.726 kb on - strandat 336.803 kb on + strandat 336.808 kb on + strandat 336.808 kb on + strandat 336.808 kb on + strandat 336.809 kb on - strandat 336.813 kb on + strandat 336.813 kb on + strandat 336.813 kb on + strandat 336.814 kb on - strandat 336.852 kb on + strandat 336.852 kb on + strandat 336.852 kb on + strandat 336.852 kb on + strandat 336.853 kb on - strandat 336.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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334,531 + Psyr_0315 0.25 -1.0
334,559 + Psyr_0315 0.31 +0.4
334,774 + Psyr_0315 0.79 +0.8
334,774 + Psyr_0315 0.79 -1.9
334,775 - Psyr_0315 0.79 -1.9
334,861 + -1.3
334,862 - +1.5
334,895 + +0.6
334,945 + +4.0
334,945 + -1.9
334,945 + +0.3
334,946 - +1.0
334,946 - +1.0
334,953 + +0.9
335,012 - -1.1
335,081 + Psyr_0316 0.12 -2.6
335,081 + Psyr_0316 0.12 +0.1
335,081 + Psyr_0316 0.12 -2.1
335,225 + -2.5
335,225 + -1.4
335,226 - +1.7
335,279 + -0.6
335,279 + +0.9
335,279 + +1.5
335,279 + -0.2
335,279 + +1.1
335,279 + -1.9
335,280 - -1.8
335,280 - -0.2
335,280 - -1.4
335,280 - +0.4
335,314 + -1.4
335,314 + -0.7
335,411 + Psyr_0317 0.25 -0.6
335,411 + Psyr_0317 0.25 +0.1
335,429 + Psyr_0317 0.28 -2.0
335,429 + Psyr_0317 0.28 -1.6
335,639 + Psyr_0317 0.62 -0.1
335,639 + Psyr_0317 0.62 -1.6
335,639 + Psyr_0317 0.62 -1.1
335,639 + Psyr_0317 0.62 -0.1
335,639 + Psyr_0317 0.62 -2.6
335,640 - Psyr_0317 0.62 -1.9
335,640 - Psyr_0317 0.62 +0.5
335,640 - Psyr_0317 0.62 -0.2
335,640 - Psyr_0317 0.62 -1.6
335,640 - Psyr_0317 0.62 +1.8
335,640 - Psyr_0317 0.62 +1.3
335,640 - Psyr_0317 0.62 -0.4
335,640 - Psyr_0317 0.62 -0.5
335,640 - Psyr_0317 0.62 -1.1
335,712 - Psyr_0317 0.74 +1.5
335,770 - Psyr_0317 0.83 +2.3
335,770 - Psyr_0317 0.83 -1.6
335,770 - Psyr_0317 0.83 -2.6
335,824 + +1.0
336,039 - +0.2
336,152 + +1.4
336,154 + -0.3
336,155 - +0.1
336,155 - +0.3
336,155 - -2.0
336,173 - -0.8
336,280 + Psyr_0318 0.32 +2.4
336,280 + Psyr_0318 0.32 +1.0
336,281 - Psyr_0318 0.32 +1.2
336,281 - Psyr_0318 0.32 -1.6
336,281 - Psyr_0318 0.32 +0.2
336,281 - Psyr_0318 0.32 -0.9
336,281 - Psyr_0318 0.32 +0.0
336,458 + Psyr_0318 0.86 -0.3
336,524 + Psyr_0319 0.11 -1.4
336,621 + Psyr_0319 0.57 -2.6
336,621 + Psyr_0319 0.57 -0.8
336,621 + Psyr_0319 0.57 -2.6
336,621 + Psyr_0319 0.57 +0.9
336,622 - Psyr_0319 0.58 -0.8
336,622 - Psyr_0319 0.58 -1.3
336,622 - Psyr_0319 0.58 -0.8
336,622 - Psyr_0319 0.58 +3.4
336,622 - Psyr_0319 0.58 +0.4
336,622 - Psyr_0319 0.58 -1.0
336,622 - Psyr_0319 0.58 +0.0
336,622 - Psyr_0319 0.58 +1.2
336,655 + Psyr_0319 0.73 -1.4
336,656 - Psyr_0319 0.74 -1.6
336,725 + +0.4
336,726 - -0.6
336,726 - -2.2
336,803 + +1.5
336,808 + +1.0
336,808 + +1.7
336,808 + +0.5
336,809 - +0.3
336,813 + +0.3
336,813 + -0.3
336,813 + -2.4
336,814 - -1.4
336,852 + +1.6
336,852 + +3.0
336,852 + +1.4
336,852 + -2.8
336,853 - -0.1
336,856 + +0.6

Or see this region's nucleotide sequence