Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0266 and Psyr_0267 overlap by 4 nucleotides Psyr_0267 and Psyr_0268 are separated by 9 nucleotides Psyr_0268 and Psyr_0269 are separated by 221 nucleotides
Psyr_0266: Psyr_0266 - GGDEF domain protein, at 282,921 to 284,993
_0266
Psyr_0267: Psyr_0267 - Endonuclease/exonuclease/phosphatase, at 284,990 to 285,865
_0267
Psyr_0268: Psyr_0268 - DSBA oxidoreductase, at 285,875 to 286,519
_0268
Psyr_0269: Psyr_0269 - cell division checkpoint GTPase YihA, at 286,741 to 287,448
_0269
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 284.362 kb on + strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.367 kb on - strand, within Psyr_0266 at 284.367 kb on - strand, within Psyr_0266 at 284.367 kb on - strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.959 kb on + strand at 284.959 kb on + strand at 284.959 kb on + strand at 284.960 kb on - strand at 284.960 kb on - strand at 284.960 kb on - strand at 284.960 kb on - strand at 285.098 kb on + strand, within Psyr_0267 at 285.185 kb on + strand, within Psyr_0267 at 285.186 kb on - strand, within Psyr_0267 at 285.186 kb on - strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.467 kb on + strand, within Psyr_0267 at 285.705 kb on + strand, within Psyr_0267 at 285.706 kb on - strand, within Psyr_0267 at 285.706 kb on - strand, within Psyr_0267 at 285.706 kb on - strand, within Psyr_0267 at 285.876 kb on + strand at 285.876 kb on + strand at 285.876 kb on + strand at 285.876 kb on + strand at 285.876 kb on + strand at 286.039 kb on - strand, within Psyr_0268 at 286.277 kb on + strand, within Psyr_0268 at 286.356 kb on + strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.514 kb on - strand at 286.524 kb on + strand at 286.524 kb on + strand at 286.525 kb on - strand at 286.525 kb on - strand at 286.525 kb on - strand at 286.597 kb on + strand at 286.597 kb on + strand at 286.611 kb on + strand at 286.611 kb on + strand at 286.645 kb on - strand at 286.645 kb on - strand at 286.645 kb on - strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 284,362 + Psyr_0266 0.70 +0.3 284,362 + Psyr_0266 0.70 +0.0 284,362 + Psyr_0266 0.70 -0.5 284,363 - Psyr_0266 0.70 +0.3 284,363 - Psyr_0266 0.70 -0.9 284,363 - Psyr_0266 0.70 +0.4 284,363 - Psyr_0266 0.70 +0.1 284,363 - Psyr_0266 0.70 -2.2 284,367 - Psyr_0266 0.70 -1.5 284,367 - Psyr_0266 0.70 -0.0 284,367 - Psyr_0266 0.70 +0.1 284,646 + Psyr_0266 0.83 +0.2 284,646 + Psyr_0266 0.83 +3.0 284,646 + Psyr_0266 0.83 +0.4 284,646 + Psyr_0266 0.83 +1.2 284,647 - Psyr_0266 0.83 -0.4 284,647 - Psyr_0266 0.83 +0.4 284,959 + -0.4 284,959 + -0.4 284,959 + +0.6 284,960 - +0.9 284,960 - -1.4 284,960 - +1.8 284,960 - -0.5 285,098 + Psyr_0267 0.12 +0.1 285,185 + Psyr_0267 0.22 -2.2 285,186 - Psyr_0267 0.22 +3.4 285,186 - Psyr_0267 0.22 +1.0 285,307 - Psyr_0267 0.36 -0.3 285,307 - Psyr_0267 0.36 +2.0 285,307 - Psyr_0267 0.36 +0.4 285,467 + Psyr_0267 0.54 +1.5 285,705 + Psyr_0267 0.82 -1.9 285,706 - Psyr_0267 0.82 -1.7 285,706 - Psyr_0267 0.82 -0.8 285,706 - Psyr_0267 0.82 +2.4 285,876 + -1.0 285,876 + -1.8 285,876 + -0.0 285,876 + -0.2 285,876 + -0.3 286,039 - Psyr_0268 0.25 +0.0 286,277 + Psyr_0268 0.62 +0.5 286,356 + Psyr_0268 0.75 -1.5 286,426 - Psyr_0268 0.85 +2.0 286,426 - Psyr_0268 0.85 -0.3 286,514 - -0.8 286,524 + -0.8 286,524 + -1.1 286,525 - -2.0 286,525 - -2.2 286,525 - +2.8 286,597 + +2.3 286,597 + -1.4 286,611 + -2.3 286,611 + -0.7 286,645 - -0.2 286,645 - +3.2 286,645 - +1.8 286,738 + -2.5 286,738 + -1.8 286,738 + -0.8 286,738 + -0.3 286,738 + +0.5 286,738 + +1.5 286,738 + +0.2 286,740 + +2.3 286,740 + -0.1 286,740 + +0.9 286,740 + -0.1 286,740 + -1.1 286,740 + +1.6 286,740 + +2.5 286,740 + -0.5
Or see this region's nucleotide sequence