Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0260 and Psyr_0261 are separated by 224 nucleotides Psyr_0261 and Psyr_0262 are separated by 228 nucleotides Psyr_0262 and Psyr_0263 are separated by 197 nucleotides
Psyr_0260: Psyr_0260 - conserved hypothetical protein, at 276,603 to 277,070
_0260
Psyr_0261: Psyr_0261 - conserved hypothetical protein, at 277,295 to 277,582
_0261
Psyr_0262: Psyr_0262 - Transport-associated protein, at 277,811 to 278,650
_0262
Psyr_0263: Psyr_0263 - Two-component response regulator AlgB, at 278,848 to 280,194
_0263
Position (kb) 277
278
279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.835 kb on + strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 276.836 kb on - strand, within Psyr_0260 at 277.071 kb on + strand at 277.188 kb on - strand at 277.244 kb on - strand at 277.263 kb on + strand at 277.264 kb on - strand at 277.264 kb on - strand at 277.266 kb on + strand at 277.331 kb on + strand, within Psyr_0261 at 277.331 kb on + strand, within Psyr_0261 at 277.331 kb on + strand, within Psyr_0261 at 277.331 kb on + strand, within Psyr_0261 at 277.332 kb on - strand, within Psyr_0261 at 277.332 kb on - strand, within Psyr_0261 at 277.332 kb on - strand, within Psyr_0261 at 277.332 kb on - strand, within Psyr_0261 at 277.393 kb on + strand, within Psyr_0261 at 277.394 kb on - strand, within Psyr_0261 at 277.552 kb on + strand, within Psyr_0261 at 277.552 kb on + strand, within Psyr_0261 at 277.553 kb on - strand, within Psyr_0261 at 277.553 kb on - strand, within Psyr_0261 at 277.553 kb on - strand, within Psyr_0261 at 277.568 kb on - strand at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 278.650 kb on + strand at 278.651 kb on - strand at 278.651 kb on - strand at 278.651 kb on - strand at 278.651 kb on - strand at 278.651 kb on - strand at 278.688 kb on + strand at 278.706 kb on + strand at 278.737 kb on - strand at 278.752 kb on + strand at 278.752 kb on + strand at 278.752 kb on + strand at 278.753 kb on - strand at 278.815 kb on - strand at 278.831 kb on + strand at 278.944 kb on + strand at 279.002 kb on + strand, within Psyr_0263 at 279.344 kb on + strand, within Psyr_0263 at 279.649 kb on + strand, within Psyr_0263 at 279.650 kb on - strand, within Psyr_0263 at 279.650 kb on - strand, within Psyr_0263
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 276,835 + Psyr_0260 0.50 +2.1 276,835 + Psyr_0260 0.50 +0.5 276,835 + Psyr_0260 0.50 +2.6 276,835 + Psyr_0260 0.50 -0.3 276,835 + Psyr_0260 0.50 -0.3 276,835 + Psyr_0260 0.50 -0.8 276,835 + Psyr_0260 0.50 -1.8 276,835 + Psyr_0260 0.50 -3.0 276,835 + Psyr_0260 0.50 +0.5 276,835 + Psyr_0260 0.50 -3.9 276,836 - Psyr_0260 0.50 +0.9 276,836 - Psyr_0260 0.50 +1.5 276,836 - Psyr_0260 0.50 +2.0 276,836 - Psyr_0260 0.50 -0.5 276,836 - Psyr_0260 0.50 -0.4 276,836 - Psyr_0260 0.50 +1.2 276,836 - Psyr_0260 0.50 +0.1 276,836 - Psyr_0260 0.50 +1.2 276,836 - Psyr_0260 0.50 +2.0 277,071 + +0.5 277,188 - -0.5 277,244 - +2.4 277,263 + +0.9 277,264 - -2.0 277,264 - +2.9 277,266 + +1.1 277,331 + Psyr_0261 0.12 -0.1 277,331 + Psyr_0261 0.12 -0.8 277,331 + Psyr_0261 0.12 -1.8 277,331 + Psyr_0261 0.12 +0.8 277,332 - Psyr_0261 0.13 -1.2 277,332 - Psyr_0261 0.13 -1.1 277,332 - Psyr_0261 0.13 +0.1 277,332 - Psyr_0261 0.13 -2.9 277,393 + Psyr_0261 0.34 +1.0 277,394 - Psyr_0261 0.34 +3.6 277,552 + Psyr_0261 0.89 +1.1 277,552 + Psyr_0261 0.89 +1.6 277,553 - Psyr_0261 0.90 +1.3 277,553 - Psyr_0261 0.90 +3.1 277,553 - Psyr_0261 0.90 -1.7 277,568 - +1.0 277,992 + Psyr_0262 0.22 +0.9 277,992 + Psyr_0262 0.22 +0.0 277,992 + Psyr_0262 0.22 -1.5 277,992 + Psyr_0262 0.22 +0.0 277,992 + Psyr_0262 0.22 +0.1 277,992 + Psyr_0262 0.22 -1.8 277,992 + Psyr_0262 0.22 +0.9 277,993 - Psyr_0262 0.22 +1.5 277,993 - Psyr_0262 0.22 -3.5 278,650 + -2.7 278,651 - -2.5 278,651 - +5.8 278,651 - +0.1 278,651 - -1.4 278,651 - +0.5 278,688 + -1.5 278,706 + +2.0 278,737 - +2.5 278,752 + +0.9 278,752 + -3.5 278,752 + +1.0 278,753 - +2.3 278,815 - +2.9 278,831 + -2.5 278,944 + -1.0 279,002 + Psyr_0263 0.11 +0.2 279,344 + Psyr_0263 0.37 -1.9 279,649 + Psyr_0263 0.59 -0.3 279,650 - Psyr_0263 0.60 +0.3 279,650 - Psyr_0263 0.60 -1.8
Or see this region's nucleotide sequence