Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0194

Experiment: epiphytic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0193 and Psyr_0194 are separated by 235 nucleotidesPsyr_0194 and Psyr_0195 are separated by 15 nucleotidesPsyr_0195 and Psyr_0196 are separated by 3 nucleotides Psyr_0193: Psyr_0193 - transcriptional regulator, AraC family, at 203,917 to 204,834 _0193 Psyr_0194: Psyr_0194 - Short-chain dehydrogenase/reductase SDR, at 205,070 to 205,804 _0194 Psyr_0195: Psyr_0195 - conserved hypothetical protein, at 205,820 to 206,563 _0195 Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947 _0196 Position (kb) 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.306 kb on - strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.309 kb on - strand, within Psyr_0193at 204.309 kb on - strand, within Psyr_0193at 204.309 kb on - strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.510 kb on + strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.518 kb on + strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.727 kb on - strand, within Psyr_0193at 204.737 kb on + strand, within Psyr_0193at 204.896 kb on - strandat 204.945 kb on + strandat 204.946 kb on - strandat 204.996 kb on - strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.422 kb on + strand, within Psyr_0194at 205.454 kb on - strand, within Psyr_0194at 205.454 kb on - strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.733 kb on + strandat 205.799 kb on + strandat 205.800 kb on - strandat 205.821 kb on + strandat 205.822 kb on - strandat 205.822 kb on - strandat 205.822 kb on - strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.888 kb on - strandat 205.996 kb on - strand, within Psyr_0195at 205.996 kb on - strand, within Psyr_0195at 206.048 kb on + strand, within Psyr_0195at 206.048 kb on + strand, within Psyr_0195at 206.121 kb on - strand, within Psyr_0195at 206.121 kb on - strand, within Psyr_0195at 206.121 kb on - strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.233 kb on - strand, within Psyr_0195at 206.233 kb on - strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.307 kb on + strand, within Psyr_0195at 206.380 kb on - strand, within Psyr_0195at 206.390 kb on - strand, within Psyr_0195at 206.441 kb on + strand, within Psyr_0195at 206.564 kb on - strandat 206.615 kb on + strandat 206.616 kb on - strandat 206.653 kb on + strandat 206.674 kb on + strandat 206.682 kb on + strandat 206.716 kb on + strandat 206.735 kb on + strandat 206.735 kb on + strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.751 kb on + strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
remove
204,200 + Psyr_0193 0.31 -1.1
204,200 + Psyr_0193 0.31 -2.2
204,201 - Psyr_0193 0.31 -0.0
204,306 - Psyr_0193 0.42 -0.7
204,308 + Psyr_0193 0.43 +2.3
204,308 + Psyr_0193 0.43 -0.3
204,308 + Psyr_0193 0.43 -1.6
204,309 - Psyr_0193 0.43 -0.3
204,309 - Psyr_0193 0.43 +0.9
204,309 - Psyr_0193 0.43 +2.1
204,340 - Psyr_0193 0.46 +3.5
204,510 + Psyr_0193 0.65 -0.8
204,511 - Psyr_0193 0.65 -0.5
204,511 - Psyr_0193 0.65 +0.3
204,511 - Psyr_0193 0.65 +0.8
204,511 - Psyr_0193 0.65 +0.8
204,511 - Psyr_0193 0.65 -1.7
204,511 - Psyr_0193 0.65 +1.4
204,518 + Psyr_0193 0.65 -2.1
204,519 - Psyr_0193 0.66 +1.1
204,519 - Psyr_0193 0.66 +0.1
204,584 + Psyr_0193 0.73 +1.1
204,585 - Psyr_0193 0.73 -0.9
204,585 - Psyr_0193 0.73 +1.6
204,585 - Psyr_0193 0.73 +0.5
204,599 + Psyr_0193 0.74 -0.7
204,599 + Psyr_0193 0.74 -2.0
204,599 + Psyr_0193 0.74 -3.0
204,599 + Psyr_0193 0.74 +0.6
204,600 - Psyr_0193 0.74 -1.2
204,600 - Psyr_0193 0.74 +0.3
204,600 - Psyr_0193 0.74 -0.1
204,600 - Psyr_0193 0.74 -2.3
204,600 - Psyr_0193 0.74 +0.0
204,605 + Psyr_0193 0.75 +1.3
204,605 + Psyr_0193 0.75 -2.4
204,605 + Psyr_0193 0.75 +0.1
204,605 + Psyr_0193 0.75 -0.0
204,605 + Psyr_0193 0.75 -2.3
204,605 + Psyr_0193 0.75 +0.4
204,605 + Psyr_0193 0.75 +1.4
204,605 + Psyr_0193 0.75 -0.8
204,605 + Psyr_0193 0.75 +0.5
204,605 + Psyr_0193 0.75 +0.0
204,605 + Psyr_0193 0.75 +0.8
204,605 + Psyr_0193 0.75 -0.2
204,606 - Psyr_0193 0.75 -3.2
204,606 - Psyr_0193 0.75 -0.7
204,606 - Psyr_0193 0.75 +0.4
204,606 - Psyr_0193 0.75 -0.0
204,606 - Psyr_0193 0.75 -2.8
204,606 - Psyr_0193 0.75 +0.5
204,606 - Psyr_0193 0.75 +1.6
204,606 - Psyr_0193 0.75 +1.2
204,606 - Psyr_0193 0.75 +1.4
204,606 - Psyr_0193 0.75 -2.7
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 -3.3
204,606 - Psyr_0193 0.75 -0.1
204,727 - Psyr_0193 0.88 -3.4
204,737 + Psyr_0193 0.89 -0.2
204,896 - -1.3
204,945 + +0.6
204,946 - +0.8
204,996 - -2.3
205,095 + +0.2
205,095 + +2.2
205,096 - +0.9
205,096 - -0.5
205,422 + Psyr_0194 0.48 -1.8
205,454 - Psyr_0194 0.52 +1.0
205,454 - Psyr_0194 0.52 -2.0
205,532 + Psyr_0194 0.63 +2.4
205,533 - Psyr_0194 0.63 +2.1
205,533 - Psyr_0194 0.63 +0.9
205,533 - Psyr_0194 0.63 +1.7
205,533 - Psyr_0194 0.63 +0.1
205,533 - Psyr_0194 0.63 +0.5
205,733 + -0.8
205,799 + +1.9
205,800 - -1.5
205,821 + +1.1
205,822 - +1.6
205,822 - -3.1
205,822 - +0.2
205,887 + -1.0
205,887 + -2.5
205,887 + -0.3
205,887 + +1.9
205,887 + -1.4
205,888 - -2.4
205,996 - Psyr_0195 0.24 +1.1
205,996 - Psyr_0195 0.24 -0.1
206,048 + Psyr_0195 0.31 -1.5
206,048 + Psyr_0195 0.31 -0.3
206,121 - Psyr_0195 0.40 +1.9
206,121 - Psyr_0195 0.40 -1.1
206,121 - Psyr_0195 0.40 +1.7
206,232 + Psyr_0195 0.55 -0.3
206,232 + Psyr_0195 0.55 +2.4
206,232 + Psyr_0195 0.55 +1.5
206,232 + Psyr_0195 0.55 +0.2
206,233 - Psyr_0195 0.56 -0.3
206,233 - Psyr_0195 0.56 -1.9
206,238 + Psyr_0195 0.56 +1.6
206,238 + Psyr_0195 0.56 -1.4
206,238 + Psyr_0195 0.56 +1.1
206,238 + Psyr_0195 0.56 +0.8
206,238 + Psyr_0195 0.56 +2.2
206,238 + Psyr_0195 0.56 -1.1
206,238 + Psyr_0195 0.56 +0.3
206,239 - Psyr_0195 0.56 -0.6
206,239 - Psyr_0195 0.56 -2.4
206,307 + Psyr_0195 0.65 -1.1
206,380 - Psyr_0195 0.75 -0.2
206,390 - Psyr_0195 0.77 +0.3
206,441 + Psyr_0195 0.83 -0.2
206,564 - +2.1
206,615 + -3.2
206,616 - -0.2
206,653 + +1.7
206,674 + -1.0
206,682 + -0.4
206,716 + +1.4
206,735 + -0.3
206,735 + +1.9
206,736 - -1.5
206,736 - +0.1
206,736 - +1.6
206,736 - +0.6
206,747 + -0.7
206,747 + -2.9
206,748 - -0.4
206,748 - +0.7
206,748 - +1.2
206,751 + +0.2
206,752 - -0.7
206,752 - +3.8
206,752 - +2.1
206,752 - +1.1
206,752 - +0.8

Or see this region's nucleotide sequence