Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0186 and Psyr_0187 are separated by 70 nucleotides Psyr_0187 and Psyr_0188 are separated by 98 nucleotides Psyr_0188 and Psyr_0189 are separated by 242 nucleotides
Psyr_0186: Psyr_0186 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 198,786 to 199,478
_0186
Psyr_0187: Psyr_0187 - conserved hypothetical protein, at 199,549 to 199,875
_0187
Psyr_0188: Psyr_0188 - Protein of unknown function UPF0047, at 199,974 to 200,399
_0188
Psyr_0189: Psyr_0189 - ammonium transporter, at 200,642 to 201,979
_0189
Position (kb) 199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 198.974 kb on + strand, within Psyr_0186 at 198.975 kb on - strand, within Psyr_0186 at 199.163 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.207 kb on - strand, within Psyr_0186 at 199.207 kb on - strand, within Psyr_0186 at 199.380 kb on + strand, within Psyr_0186 at 199.501 kb on - strand at 199.501 kb on - strand at 199.534 kb on + strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.569 kb on - strand at 199.569 kb on - strand at 199.569 kb on - strand at 199.569 kb on - strand at 199.771 kb on + strand, within Psyr_0187 at 199.771 kb on + strand, within Psyr_0187 at 199.771 kb on + strand, within Psyr_0187 at 199.772 kb on - strand, within Psyr_0187 at 199.772 kb on - strand, within Psyr_0187 at 199.854 kb on + strand at 199.855 kb on - strand at 199.855 kb on - strand at 199.855 kb on - strand at 199.857 kb on + strand at 199.857 kb on + strand at 199.857 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.881 kb on - strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.910 kb on - strand at 199.911 kb on + strand at 199.911 kb on + strand at 199.912 kb on - strand at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.045 kb on - strand, within Psyr_0188 at 200.045 kb on - strand, within Psyr_0188 at 200.045 kb on - strand, within Psyr_0188 at 200.045 kb on - strand, within Psyr_0188 at 200.045 kb on - strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.331 kb on + strand, within Psyr_0188 at 200.331 kb on + strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.399 kb on + strand at 200.399 kb on + strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.429 kb on + strand at 200.430 kb on - strand at 200.430 kb on - strand at 200.430 kb on - strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.576 kb on + strand at 200.643 kb on + strand at 200.643 kb on + strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.652 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.770 kb on - strand at 201.259 kb on - strand, within Psyr_0189 at 201.314 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.327 kb on - strand, within Psyr_0189 at 201.327 kb on - strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 198,974 + Psyr_0186 0.27 +2.1 198,975 - Psyr_0186 0.27 -0.6 199,163 + Psyr_0186 0.54 -0.1 199,206 + Psyr_0186 0.61 -1.6 199,206 + Psyr_0186 0.61 -0.8 199,206 + Psyr_0186 0.61 -0.1 199,207 - Psyr_0186 0.61 -0.1 199,207 - Psyr_0186 0.61 -2.9 199,380 + Psyr_0186 0.86 +0.9 199,501 - +3.1 199,501 - +0.3 199,534 + -1.0 199,535 - -2.0 199,535 - +0.6 199,568 + +1.2 199,568 + -1.3 199,568 + +1.5 199,568 + -1.1 199,569 - -0.5 199,569 - -1.8 199,569 - +4.4 199,569 - +0.3 199,771 + Psyr_0187 0.68 +2.1 199,771 + Psyr_0187 0.68 -2.2 199,771 + Psyr_0187 0.68 -1.4 199,772 - Psyr_0187 0.68 +2.3 199,772 - Psyr_0187 0.68 +1.6 199,854 + +1.8 199,855 - +0.4 199,855 - -0.6 199,855 - -3.3 199,857 + +2.4 199,857 + -1.3 199,857 + -1.8 199,880 + -1.7 199,880 + +4.5 199,881 - -0.3 199,905 + +1.2 199,905 + +2.1 199,905 + -0.5 199,905 + +4.1 199,905 + -3.0 199,906 - +2.4 199,906 - -0.3 199,909 + -1.4 199,909 + +0.6 199,909 + -0.0 199,910 - +1.9 199,911 + -0.7 199,911 + -1.4 199,912 - -1.7 200,044 + Psyr_0188 0.16 +0.1 200,044 + Psyr_0188 0.16 +1.4 200,044 + Psyr_0188 0.16 +2.5 200,044 + Psyr_0188 0.16 -0.5 200,045 - Psyr_0188 0.17 -2.8 200,045 - Psyr_0188 0.17 -0.9 200,045 - Psyr_0188 0.17 +0.2 200,045 - Psyr_0188 0.17 -0.4 200,045 - Psyr_0188 0.17 +0.8 200,048 + Psyr_0188 0.17 +2.8 200,048 + Psyr_0188 0.17 +2.7 200,048 + Psyr_0188 0.17 +0.3 200,049 - Psyr_0188 0.18 -2.7 200,049 - Psyr_0188 0.18 -2.7 200,049 - Psyr_0188 0.18 +1.3 200,049 - Psyr_0188 0.18 +1.4 200,049 - Psyr_0188 0.18 -0.3 200,049 - Psyr_0188 0.18 +1.0 200,049 - Psyr_0188 0.18 -1.7 200,267 + Psyr_0188 0.69 -1.7 200,267 + Psyr_0188 0.69 +2.3 200,267 + Psyr_0188 0.69 -0.8 200,267 + Psyr_0188 0.69 -0.3 200,267 + Psyr_0188 0.69 -2.6 200,267 + Psyr_0188 0.69 -2.3 200,267 + Psyr_0188 0.69 -2.0 200,268 - Psyr_0188 0.69 +0.6 200,268 - Psyr_0188 0.69 -0.0 200,268 - Psyr_0188 0.69 -2.3 200,268 - Psyr_0188 0.69 -1.3 200,268 - Psyr_0188 0.69 -1.6 200,268 - Psyr_0188 0.69 -2.3 200,268 - Psyr_0188 0.69 +0.6 200,280 + Psyr_0188 0.72 +0.6 200,280 + Psyr_0188 0.72 +3.3 200,280 + Psyr_0188 0.72 -1.3 200,280 + Psyr_0188 0.72 +1.1 200,280 + Psyr_0188 0.72 -0.5 200,281 - Psyr_0188 0.72 +1.7 200,281 - Psyr_0188 0.72 -0.6 200,281 - Psyr_0188 0.72 +0.9 200,281 - Psyr_0188 0.72 +1.2 200,281 - Psyr_0188 0.72 +0.7 200,281 - Psyr_0188 0.72 -1.7 200,281 - Psyr_0188 0.72 +1.2 200,281 - Psyr_0188 0.72 -1.7 200,281 - Psyr_0188 0.72 +1.3 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 -1.2 200,281 - Psyr_0188 0.72 -0.9 200,281 - Psyr_0188 0.72 +2.1 200,281 - Psyr_0188 0.72 -3.3 200,281 - Psyr_0188 0.72 +0.5 200,281 - Psyr_0188 0.72 +2.3 200,281 - Psyr_0188 0.72 +1.1 200,281 - Psyr_0188 0.72 +1.8 200,331 + Psyr_0188 0.84 -0.4 200,331 + Psyr_0188 0.84 -0.7 200,332 - Psyr_0188 0.84 -1.5 200,399 + +1.4 200,399 + -1.6 200,400 - +0.6 200,400 - +0.8 200,400 - +0.9 200,429 + +1.6 200,430 - +2.7 200,430 - +1.5 200,430 - +0.2 200,574 + -0.5 200,574 + -2.3 200,576 + +1.1 200,643 + +0.9 200,643 + +2.0 200,644 - -2.3 200,644 - -0.5 200,644 - -0.8 200,652 + -2.8 200,769 + -1.5 200,769 + +1.4 200,770 - -1.4 200,770 - -3.2 200,770 - +0.7 200,770 - +2.1 200,770 - -2.3 201,259 - Psyr_0189 0.46 +1.0 201,314 + Psyr_0189 0.50 -3.5 201,326 + Psyr_0189 0.51 -0.9 201,327 - Psyr_0189 0.51 -0.7 201,327 - Psyr_0189 0.51 -3.9 201,352 + Psyr_0189 0.53 +0.2 201,352 + Psyr_0189 0.53 -0.2 201,352 + Psyr_0189 0.53 -2.5 201,352 + Psyr_0189 0.53 +0.9 201,352 + Psyr_0189 0.53 +0.6 201,352 + Psyr_0189 0.53 -0.3 201,352 + Psyr_0189 0.53 -3.5 201,352 + Psyr_0189 0.53 +0.1 201,352 + Psyr_0189 0.53 +1.6 201,352 + Psyr_0189 0.53 -0.6 201,352 + Psyr_0189 0.53 +0.7 201,352 + Psyr_0189 0.53 -1.3 201,352 + Psyr_0189 0.53 -0.3 201,352 + Psyr_0189 0.53 -2.1 201,352 + Psyr_0189 0.53 +1.1 201,352 + Psyr_0189 0.53 +0.9 201,352 + Psyr_0189 0.53 +0.0 201,352 + Psyr_0189 0.53 -1.1 201,353 - Psyr_0189 0.53 +0.4 201,353 - Psyr_0189 0.53 -1.3 201,353 - Psyr_0189 0.53 +1.1 201,353 - Psyr_0189 0.53 -1.5 201,356 + Psyr_0189 0.53 -3.5 201,356 + Psyr_0189 0.53 +0.1 201,356 + Psyr_0189 0.53 +0.5 201,356 + Psyr_0189 0.53 -2.6 201,356 + Psyr_0189 0.53 +1.0 201,356 + Psyr_0189 0.53 +0.6 201,356 + Psyr_0189 0.53 -1.9 201,356 + Psyr_0189 0.53 -1.5 201,356 + Psyr_0189 0.53 -3.7 201,357 - Psyr_0189 0.53 -2.0 201,357 - Psyr_0189 0.53 +2.1 201,357 - Psyr_0189 0.53 -1.5 201,357 - Psyr_0189 0.53 +0.2 201,357 - Psyr_0189 0.53 +2.1 201,357 - Psyr_0189 0.53 -0.5 201,357 - Psyr_0189 0.53 -3.2 201,357 - Psyr_0189 0.53 -0.3
Or see this region's nucleotide sequence