Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0407 and Atu0408 are separated by 72 nucleotides Atu0408 and Atu0409 are separated by 179 nucleotides
Atu0407: Atu0407 - ABC transporter, substrate binding protein (iron), at 403,461 to 404,477
Atu0407
Atu0408: Atu0408 - ABC transporter, membrane spanning protein, at 404,550 to 406,226
Atu0408
Atu0409: Atu0409 - ferrichrome iron receptor, at 406,406 to 408,595
Atu0409
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 403.589 kb on - strand, within Atu0407 at 403.683 kb on - strand, within Atu0407 at 403.766 kb on + strand, within Atu0407 at 403.766 kb on + strand, within Atu0407 at 403.771 kb on + strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.774 kb on - strand, within Atu0407 at 403.795 kb on + strand, within Atu0407 at 403.828 kb on - strand, within Atu0407 at 403.921 kb on - strand, within Atu0407 at 403.940 kb on + strand, within Atu0407 at 403.946 kb on - strand, within Atu0407 at 403.948 kb on - strand, within Atu0407 at 403.964 kb on + strand, within Atu0407 at 404.018 kb on + strand, within Atu0407 at 404.026 kb on - strand, within Atu0407 at 404.070 kb on + strand, within Atu0407 at 404.105 kb on + strand, within Atu0407 at 404.156 kb on - strand, within Atu0407 at 404.161 kb on - strand, within Atu0407 at 404.213 kb on + strand, within Atu0407 at 404.301 kb on + strand, within Atu0407 at 404.309 kb on - strand, within Atu0407 at 404.338 kb on + strand, within Atu0407 at 404.438 kb on + strand at 404.497 kb on + strand at 404.592 kb on + strand at 404.685 kb on + strand at 404.690 kb on - strand at 404.693 kb on - strand at 404.693 kb on - strand at 404.793 kb on + strand, within Atu0408 at 404.855 kb on - strand, within Atu0408 at 404.895 kb on - strand, within Atu0408 at 405.006 kb on - strand, within Atu0408 at 405.019 kb on + strand, within Atu0408 at 405.027 kb on - strand, within Atu0408 at 405.035 kb on - strand, within Atu0408 at 405.054 kb on + strand, within Atu0408 at 405.196 kb on + strand, within Atu0408 at 405.206 kb on + strand, within Atu0408 at 405.320 kb on - strand, within Atu0408 at 405.343 kb on - strand, within Atu0408 at 405.441 kb on + strand, within Atu0408 at 405.442 kb on + strand, within Atu0408 at 405.460 kb on + strand, within Atu0408 at 405.478 kb on + strand, within Atu0408 at 405.491 kb on - strand, within Atu0408 at 405.547 kb on - strand, within Atu0408 at 405.597 kb on - strand, within Atu0408 at 405.597 kb on - strand, within Atu0408 at 405.606 kb on - strand, within Atu0408 at 405.634 kb on + strand, within Atu0408 at 405.644 kb on + strand, within Atu0408 at 405.693 kb on - strand, within Atu0408 at 405.793 kb on - strand, within Atu0408 at 405.793 kb on - strand, within Atu0408 at 405.843 kb on + strand, within Atu0408 at 405.843 kb on + strand, within Atu0408 at 405.851 kb on - strand, within Atu0408 at 405.856 kb on - strand, within Atu0408 at 405.946 kb on + strand, within Atu0408 at 405.954 kb on - strand, within Atu0408 at 405.963 kb on + strand, within Atu0408 at 406.003 kb on - strand, within Atu0408 at 406.015 kb on + strand, within Atu0408 at 406.023 kb on + strand, within Atu0408 at 406.065 kb on + strand at 406.137 kb on - strand at 406.263 kb on - strand at 406.263 kb on - strand at 406.376 kb on + strand at 406.447 kb on + strand at 406.463 kb on + strand at 406.471 kb on - strand at 406.495 kb on + strand at 406.506 kb on + strand at 406.514 kb on - strand at 406.566 kb on - strand at 406.721 kb on + strand, within Atu0409 at 406.729 kb on - strand, within Atu0409 at 406.741 kb on + strand, within Atu0409 at 406.749 kb on - strand, within Atu0409 at 406.781 kb on + strand, within Atu0409 at 406.781 kb on + strand, within Atu0409 at 406.798 kb on - strand, within Atu0409 at 406.864 kb on - strand, within Atu0409 at 406.874 kb on - strand, within Atu0409 at 406.890 kb on + strand, within Atu0409 at 406.905 kb on - strand, within Atu0409 at 406.916 kb on - strand, within Atu0409 at 406.962 kb on - strand, within Atu0409 at 407.040 kb on - strand, within Atu0409 at 407.082 kb on - strand, within Atu0409 at 407.082 kb on - strand, within Atu0409 at 407.093 kb on - strand, within Atu0409 at 407.140 kb on - strand, within Atu0409 at 407.164 kb on - strand, within Atu0409 at 407.169 kb on - strand, within Atu0409 at 407.206 kb on - strand, within Atu0409
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 403,589 - Atu0407 0.13 -0.1 403,683 - Atu0407 0.22 -0.4 403,766 + Atu0407 0.30 -0.5 403,766 + Atu0407 0.30 +0.3 403,771 + Atu0407 0.30 +0.1 403,774 - Atu0407 0.31 +0.4 403,774 - Atu0407 0.31 +0.3 403,774 - Atu0407 0.31 -0.1 403,795 + Atu0407 0.33 +0.2 403,828 - Atu0407 0.36 +0.2 403,921 - Atu0407 0.45 +0.3 403,940 + Atu0407 0.47 +0.3 403,946 - Atu0407 0.48 +0.0 403,948 - Atu0407 0.48 +0.1 403,964 + Atu0407 0.49 +0.0 404,018 + Atu0407 0.55 -0.5 404,026 - Atu0407 0.56 +0.0 404,070 + Atu0407 0.60 +1.0 404,105 + Atu0407 0.63 -0.8 404,156 - Atu0407 0.68 +0.1 404,161 - Atu0407 0.69 +1.0 404,213 + Atu0407 0.74 +0.3 404,301 + Atu0407 0.83 +0.1 404,309 - Atu0407 0.83 -0.1 404,338 + Atu0407 0.86 +0.6 404,438 + +0.9 404,497 + -0.4 404,592 + +0.2 404,685 + +0.3 404,690 - -0.2 404,693 - +0.2 404,693 - -0.7 404,793 + Atu0408 0.14 -0.4 404,855 - Atu0408 0.18 -0.1 404,895 - Atu0408 0.21 +0.1 405,006 - Atu0408 0.27 -0.5 405,019 + Atu0408 0.28 +0.5 405,027 - Atu0408 0.28 -0.2 405,035 - Atu0408 0.29 -1.4 405,054 + Atu0408 0.30 +0.2 405,196 + Atu0408 0.39 +0.0 405,206 + Atu0408 0.39 +0.2 405,320 - Atu0408 0.46 +0.4 405,343 - Atu0408 0.47 +0.5 405,441 + Atu0408 0.53 -0.1 405,442 + Atu0408 0.53 -0.6 405,460 + Atu0408 0.54 -0.2 405,478 + Atu0408 0.55 +0.1 405,491 - Atu0408 0.56 +0.4 405,547 - Atu0408 0.59 -0.4 405,597 - Atu0408 0.62 -0.3 405,597 - Atu0408 0.62 -1.1 405,606 - Atu0408 0.63 +0.4 405,634 + Atu0408 0.65 -0.5 405,644 + Atu0408 0.65 -0.2 405,693 - Atu0408 0.68 +0.4 405,793 - Atu0408 0.74 +0.8 405,793 - Atu0408 0.74 -0.8 405,843 + Atu0408 0.77 -0.2 405,843 + Atu0408 0.77 -1.0 405,851 - Atu0408 0.78 +0.0 405,856 - Atu0408 0.78 +0.3 405,946 + Atu0408 0.83 +0.2 405,954 - Atu0408 0.84 +0.4 405,963 + Atu0408 0.84 +0.2 406,003 - Atu0408 0.87 +0.0 406,015 + Atu0408 0.87 -2.1 406,023 + Atu0408 0.88 +0.3 406,065 + -0.2 406,137 - +0.6 406,263 - +0.6 406,263 - -0.2 406,376 + -0.1 406,447 + +0.2 406,463 + +0.0 406,471 - -0.1 406,495 + -1.3 406,506 + +0.4 406,514 - -1.2 406,566 - +0.2 406,721 + Atu0409 0.14 +1.0 406,729 - Atu0409 0.15 +0.6 406,741 + Atu0409 0.15 -1.0 406,749 - Atu0409 0.16 -0.0 406,781 + Atu0409 0.17 -0.2 406,781 + Atu0409 0.17 +0.1 406,798 - Atu0409 0.18 +0.2 406,864 - Atu0409 0.21 -0.0 406,874 - Atu0409 0.21 +0.8 406,890 + Atu0409 0.22 +0.0 406,905 - Atu0409 0.23 -0.5 406,916 - Atu0409 0.23 -0.4 406,962 - Atu0409 0.25 -0.1 407,040 - Atu0409 0.29 +0.1 407,082 - Atu0409 0.31 -0.5 407,082 - Atu0409 0.31 +0.2 407,093 - Atu0409 0.31 -0.7 407,140 - Atu0409 0.34 -0.2 407,164 - Atu0409 0.35 +0.6 407,169 - Atu0409 0.35 +0.8 407,206 - Atu0409 0.37 +0.4
Or see this region's nucleotide sequence