Strain Fitness in Pseudomonas putida KT2440 around PP_5373

Experiment: 6-methoxy-2(3H)-benzoxazolone 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	6-methoxy-2(3H)-benzoxazolone 2.5 mM
6,122,702	+		PP_5372	0.37	+0.3
6,122,702	+		PP_5372	0.37	-0.0
6,122,703	-		PP_5372	0.37	-0.5
6,122,703	-		PP_5372	0.37	-0.0
6,122,715	+		PP_5372	0.38	-0.0
6,122,716	-		PP_5372	0.38	+0.4
6,122,716	-		PP_5372	0.38	+0.2
6,122,716	-		PP_5372	0.38	-0.0
6,122,720	-		PP_5372	0.39	-0.4
6,122,720	-		PP_5372	0.39	+0.1
6,122,729	+		PP_5372	0.39	-0.1
6,122,729	+		PP_5372	0.39	-0.1
6,122,729	+		PP_5372	0.39	+0.2
6,122,964	+		PP_5372	0.55	-0.1
6,122,964	+		PP_5372	0.55	-0.4
6,122,965	-		PP_5372	0.56	+0.6
6,123,140	+		PP_5372	0.68	+0.2
6,123,190	-		PP_5372	0.71	-0.1
6,123,190	-		PP_5372	0.71	-0.4
6,123,203	+		PP_5372	0.72	-0.1
6,123,203	+		PP_5372	0.72	+0.1
6,123,204	-		PP_5372	0.72	-0.1
6,123,204	-		PP_5372	0.72	-1.0
6,123,204	-		PP_5372	0.72	-0.5
6,123,204	-		PP_5372	0.72	-0.5
6,123,204	-		PP_5372	0.72	-0.3
6,123,207	+		PP_5372	0.72	-0.2
6,123,208	-		PP_5372	0.72	-0.2
6,123,208	-		PP_5372	0.72	+0.0
6,123,261	+		PP_5372	0.76	+0.2
6,123,261	+		PP_5372	0.76	+0.0
6,123,261	+		PP_5372	0.76	+0.1
6,123,264	+		PP_5372	0.76	-0.6
6,123,265	-		PP_5372	0.76	+0.8
6,123,265	-		PP_5372	0.76	-0.0
6,123,273	+		PP_5372	0.77	+0.7
6,123,535	+				+0.3
6,123,582	-				+0.4
6,123,597	-				+0.1
6,123,670	+				+0.2
6,123,670	+				-0.3
6,123,715	+				-0.5
6,123,778	-		PP_5373	0.13	-0.2
6,123,778	-		PP_5373	0.13	-0.1
6,123,958	+		PP_5373	0.29	+0.2
6,123,959	-		PP_5373	0.29	-0.0
6,123,959	-		PP_5373	0.29	+0.3
6,124,036	+		PP_5373	0.35	-0.3
6,124,036	+		PP_5373	0.35	-0.9
6,124,037	-		PP_5373	0.35	+0.2
6,124,037	-		PP_5373	0.35	+0.2
6,124,037	-		PP_5373	0.35	+0.1
6,124,037	-		PP_5373	0.35	+0.4
6,124,037	-		PP_5373	0.35	+0.4
6,124,081	+		PP_5373	0.39	-0.1
6,124,081	+		PP_5373	0.39	-0.2
6,124,081	+		PP_5373	0.39	-0.7
6,124,103	-		PP_5373	0.41	-0.2
6,124,138	+		PP_5373	0.44	-0.0
6,124,138	+		PP_5373	0.44	+0.4
6,124,139	-		PP_5373	0.44	+0.4
6,124,139	-		PP_5373	0.44	+0.0
6,124,139	-		PP_5373	0.44	-0.3
6,124,150	+		PP_5373	0.45	-0.4
6,124,150	+		PP_5373	0.45	-0.2
6,124,150	+		PP_5373	0.45	+0.1
6,124,151	-		PP_5373	0.45	+0.5
6,124,165	-		PP_5373	0.46	-0.1
6,124,165	-		PP_5373	0.46	+0.7
6,124,196	+		PP_5373	0.49	+0.2
6,124,196	+		PP_5373	0.49	-0.3
6,124,196	+		PP_5373	0.49	+0.3
6,124,196	+		PP_5373	0.49	-0.3
6,124,196	+		PP_5373	0.49	+0.0
6,124,196	+		PP_5373	0.49	-0.6
6,124,196	+		PP_5373	0.49	-0.8
6,124,197	-		PP_5373	0.49	-0.4
6,124,197	-		PP_5373	0.49	-0.1
6,124,197	-		PP_5373	0.49	-0.4
6,124,197	-		PP_5373	0.49	-0.5
6,124,197	-		PP_5373	0.49	-0.2
6,124,450	+		PP_5373	0.70	+0.5
6,124,451	-		PP_5373	0.70	-0.2
6,124,451	-		PP_5373	0.70	-0.1
6,124,466	-		PP_5373	0.71	-0.8
6,124,615	+		PP_5373	0.84	-0.1
6,124,615	+		PP_5373	0.84	-0.2
6,124,615	+		PP_5373	0.84	+0.3
6,124,616	-		PP_5373	0.84	+0.4
6,124,648	-		PP_5373	0.86	-0.0
6,124,648	-		PP_5373	0.86	+0.6
6,124,649	+		PP_5373	0.87	+0.6
6,124,649	+		PP_5373	0.87	+0.0
6,124,649	+		PP_5373	0.87	-0.2
6,124,649	+		PP_5373	0.87	-0.0
6,124,650	-		PP_5373	0.87	-0.1
6,124,650	-		PP_5373	0.87	-0.3
6,124,661	+		PP_5373	0.88	-0.2
6,124,662	-		PP_5373	0.88	-0.2
6,124,662	-		PP_5373	0.88	+0.1
6,124,697	-				-0.1
6,124,745	+				+0.6
6,124,781	+				+0.1
6,124,800	+				+0.2
6,124,825	+				+0.3
6,124,825	+				-1.0
6,124,899	-				+0.3
6,124,899	-				+0.1
6,124,909	+				+0.2
6,124,910	-				+0.3
6,124,953	+				-0.3
6,124,954	-				+0.3
6,124,954	-				+0.2
6,124,959	+				+0.0
6,124,960	-				-0.1
6,124,963	+				+0.5
6,124,964	-				-0.1
6,125,030	+				+0.5
6,125,055	+				+0.4
6,125,056	-				+0.1
6,125,090	-				+0.1
6,125,090	-				+0.1
6,125,090	-				-0.1
6,125,090	-				-0.2
6,125,194	-				-0.1
6,125,273	+				-0.7
6,125,273	+				-0.1
6,125,274	-				+0.2
6,125,274	-				+0.1
6,125,274	-				+0.3
6,125,277	-				+0.1
6,125,410	+		PP_5374	0.12	-0.4
6,125,410	+		PP_5374	0.12	-0.2
6,125,411	-		PP_5374	0.12	-0.3
6,125,411	-		PP_5374	0.12	+0.5
6,125,411	-		PP_5374	0.12	+0.3
6,125,436	+		PP_5374	0.13	+0.1
6,125,436	+		PP_5374	0.13	-0.2
6,125,436	+		PP_5374	0.13	-0.2
6,125,437	-		PP_5374	0.14	+0.0
6,125,437	-				+0.7
6,125,560	+		PP_5374	0.21	-0.3
6,125,560	+		PP_5374	0.21	+0.5
6,125,561	-		PP_5374	0.21	+0.4
6,125,613	+		PP_5374	0.24	+0.1
6,125,613	+		PP_5374	0.24	+0.3
6,125,614	-		PP_5374	0.24	-0.1
6,125,622	+		PP_5374	0.24	+0.1
6,125,623	-		PP_5374	0.24	-0.4
6,125,623	-		PP_5374	0.24	-0.4
6,125,627	+		PP_5374	0.25	+0.1
6,125,628	-		PP_5374	0.25	-0.1
6,125,655	+		PP_5374	0.26	+0.1
6,125,655	+		PP_5374	0.26	+0.4
6,125,686	+		PP_5374	0.28	+0.4
6,125,687	-		PP_5374	0.28	-0.2
6,125,758	+		PP_5374	0.32	+0.3
6,125,758	+		PP_5374	0.32	-0.7
6,125,758	+		PP_5374	0.32	-0.9
6,125,758	+		PP_5374	0.32	-0.1
6,125,758	+				-1.0
6,125,758	+		PP_5374	0.32	-0.8
6,125,759	-		PP_5374	0.32	-0.3
6,125,759	-		PP_5374	0.32	-0.2
6,125,759	-		PP_5374	0.32	+0.4