Strain Fitness in Pseudomonas putida KT2440 around PP_1078

Experiment: Apigenin 100 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 100 ug/ml
1,236,010	+		PP_1076	0.79	-0.1
1,236,011	-		PP_1076	0.79	-0.1
1,236,011	-		PP_1076	0.79	+0.0
1,236,044	+		PP_1076	0.83	+0.3
1,236,045	-		PP_1076	0.83	-0.2
1,236,045	-		PP_1076	0.83	-0.0
1,236,190	+				+0.1
1,236,190	+				+0.1
1,236,190	+				+0.2
1,236,190	+				+0.3
1,236,190	+				-0.2
1,236,191	-				-0.1
1,236,191	-				-0.3
1,236,191	-				-0.2
1,236,191	-				+0.3
1,236,249	-				+1.1
1,236,272	+				+0.0
1,236,273	-				-0.0
1,236,286	+				-0.1
1,236,287	-				-0.0
1,236,287	-				+0.5
1,236,288	+				+0.2
1,236,288	+				-0.1
1,236,288	+				-0.3
1,236,288	+				-0.1
1,236,288	+				-0.0
1,236,288	+				-1.3
1,236,288	+				-1.4
1,236,289	-				+0.5
1,236,289	-				-0.2
1,236,289	-				+0.2
1,236,289	-				+0.4
1,236,289	-				+0.6
1,236,289	-				-0.0
1,236,289	-				-0.2
1,236,289	-				+0.4
1,236,289	-				+0.3
1,236,289	-				-0.3
1,236,289	-				-0.3
1,236,319	+				+0.2
1,236,321	+				-0.4
1,236,371	+				-0.2
1,236,402	+				-0.1
1,236,403	-				+0.1
1,236,405	+				-0.0
1,236,504	+				-0.1
1,236,549	-		PP_1077	0.12	+0.2
1,236,776	+		PP_1077	0.61	+0.5
1,236,830	-		PP_1077	0.72	+0.0
1,236,830	-		PP_1077	0.72	+0.0
1,236,830	-		PP_1077	0.72	-0.4
1,236,830	-		PP_1077	0.72	-0.2
1,236,830	-		PP_1077	0.72	+0.1
1,236,830	-		PP_1077	0.72	-0.2
1,236,859	+		PP_1077	0.78	+0.1
1,236,859	+		PP_1077	0.78	-0.0
1,236,859	+		PP_1077	0.78	-0.2
1,236,859	+		PP_1077	0.78	+0.7
1,236,859	+		PP_1077	0.78	+0.0
1,236,860	-		PP_1077	0.78	+0.1
1,236,860	-		PP_1077	0.78	-0.0
1,236,860	-		PP_1077	0.78	+0.4
1,236,860	-		PP_1077	0.78	-0.4
1,236,923	+				+0.2
1,236,924	-				-0.1
1,236,925	+				+0.1
1,236,925	+				-0.3
1,236,925	+				+0.0
1,236,925	+				-0.8
1,236,926	-				-0.1
1,236,926	-				+0.4
1,237,077	+				+0.1
1,237,078	-				-0.3
1,237,262	+		PP_1078	0.24	+0.2
1,237,263	-		PP_1078	0.24	+2.0
1,237,281	+		PP_1078	0.25	-0.0
1,237,281	+		PP_1078	0.25	+0.2
1,237,281	+		PP_1078	0.25	-0.4
1,237,281	+		PP_1078	0.25	-0.3
1,237,281	+		PP_1078	0.25	-0.5
1,237,281	+		PP_1078	0.25	-0.1
1,237,313	-		PP_1078	0.28	+0.1
1,237,313	-		PP_1078	0.28	+0.4
1,237,313	-		PP_1078	0.28	-0.2
1,237,322	+		PP_1078	0.29	-0.0
1,237,387	+		PP_1078	0.35	-0.3
1,237,387	+		PP_1078	0.35	-0.1
1,237,388	-		PP_1078	0.35	-0.2
1,237,436	-		PP_1078	0.39	-0.5
1,237,436	-		PP_1078	0.39	+0.5
1,237,444	+		PP_1078	0.40	+0.4
1,237,837	+		PP_1078	0.75	+0.3
1,237,837	+		PP_1078	0.75	+0.1
1,237,838	-		PP_1078	0.76	+0.3
1,237,838	-		PP_1078	0.76	+0.2
1,237,838	-		PP_1078	0.76	+0.1
1,237,838	-		PP_1078	0.76	+0.5
1,237,838	-		PP_1078	0.76	-0.3
1,237,848	+		PP_1078	0.76	+0.1
1,237,848	+		PP_1078	0.76	+0.3
1,237,849	-				-0.4
1,238,063	-				-0.2
1,238,094	+				-0.0
1,238,094	+				-0.2
1,238,118	+				-0.4
1,238,119	-				+0.1
1,238,129	+				-0.7
1,238,129	+				-0.3
1,238,130	-				+0.3
1,238,469	+		PP_1079	0.40	-0.4
1,238,469	+		PP_1079	0.40	+0.1
1,238,470	-		PP_1079	0.40	+0.6
1,238,470	-		PP_1079	0.40	-0.4
1,238,526	+		PP_1079	0.46	+0.1
1,238,526	+		PP_1079	0.46	-0.7
1,238,526	+		PP_1079	0.46	-0.4
1,238,527	-		PP_1079	0.46	-0.2
1,238,527	-		PP_1079	0.46	-0.2
1,238,527	-		PP_1079	0.46	-0.3
1,238,527	-		PP_1079	0.46	-0.1
1,238,527	-		PP_1079	0.46	-0.3
1,239,033	+				+0.3
1,239,038	+				-0.1
1,239,038	+				-0.3
1,239,039	-				-0.1
1,239,039	-				+0.1
1,239,039	-				-0.0
1,239,039	-				-0.4