Strain Fitness in Pseudomonas putida KT2440 around PP_0315

Experiment: Apigenin 100 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0314 and PP_0315 are separated by 64 nucleotidesPP_0315 and PP_0316 are separated by 289 nucleotides PP_0314: PP_0314 - conserved protein of unknown function, at 377,326 to 378,057 _0314 PP_0315: PP_0315 - putative glycine-betaine dioxygenase subunit, at 378,122 to 379,414 _0315 PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810 _0316 Position (kb) 378 379 380Strain fitness (log2 ratio) -1 0 1at 377.205 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.291 kb on - strandat 377.312 kb on + strandat 377.312 kb on + strandat 377.313 kb on - strandat 377.313 kb on - strandat 377.398 kb on + strandat 377.407 kb on + strand, within PP_0314at 377.408 kb on - strand, within PP_0314at 377.423 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.482 kb on + strandat 377.482 kb on + strand, within PP_0314at 377.483 kb on - strand, within PP_0314at 377.510 kb on - strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.549 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.622 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.689 kb on - strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.745 kb on + strand, within PP_0314at 377.745 kb on + strand, within PP_0314at 377.746 kb on - strand, within PP_0314at 377.746 kb on - strand, within PP_0314at 377.783 kb on - strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.868 kb on + strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.869 kb on - strand, within PP_0314at 377.874 kb on + strand, within PP_0314at 377.875 kb on - strand, within PP_0314at 377.875 kb on - strand, within PP_0314at 377.895 kb on + strand, within PP_0314at 377.896 kb on - strand, within PP_0314at 377.965 kb on + strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 377.966 kb on - strand, within PP_0314at 378.028 kb on + strandat 378.028 kb on + strandat 378.028 kb on + strandat 378.035 kb on + strandat 378.035 kb on + strandat 378.036 kb on - strandat 378.036 kb on - strandat 378.036 kb on - strandat 378.040 kb on - strandat 378.048 kb on - strandat 378.120 kb on + strandat 378.121 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.124 kb on - strandat 378.147 kb on + strandat 378.147 kb on + strandat 378.192 kb on + strandat 378.193 kb on - strandat 378.193 kb on - strandat 378.193 kb on - strandat 378.226 kb on - strandat 378.348 kb on + strand, within PP_0315at 378.769 kb on - strand, within PP_0315at 378.813 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.823 kb on + strand, within PP_0315at 378.824 kb on - strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.858 kb on + strand, within PP_0315at 378.859 kb on - strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.870 kb on + strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 378.871 kb on - strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.041 kb on + strand, within PP_0315at 379.042 kb on - strand, within PP_0315at 379.042 kb on - strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.203 kb on + strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.204 kb on - strand, within PP_0315at 379.255 kb on + strand, within PP_0315at 379.256 kb on - strand, within PP_0315at 379.302 kb on + strandat 379.303 kb on - strandat 379.324 kb on - strandat 379.419 kb on + strandat 379.419 kb on + strandat 379.420 kb on - strandat 379.420 kb on - strandat 379.689 kb on - strandat 379.914 kb on + strand, within PP_0316at 379.914 kb on + strand, within PP_0316at 380.091 kb on + strand, within PP_0316at 380.091 kb on + strand, within PP_0316at 380.111 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.146 kb on - strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.317 kb on - strand, within PP_0316at 380.355 kb on + strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.394 kb on + strand, within PP_0316at 380.394 kb on + strand, within PP_0316

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Apigenin 100 ug/ml
remove
377,205 + +0.1
377,267 + -0.3
377,267 + -0.2
377,267 + +0.2
377,291 - +0.0
377,312 + +0.3
377,312 + -0.2
377,313 - +0.9
377,313 - -0.3
377,398 + -0.3
377,407 + PP_0314 0.11 +0.4
377,408 - PP_0314 0.11 -0.4
377,423 + PP_0314 0.13 -1.1
377,478 + PP_0314 0.21 -0.1
377,478 + PP_0314 0.21 -0.1
377,478 + PP_0314 0.21 +0.3
377,479 - PP_0314 0.21 -0.3
377,479 - PP_0314 0.21 -0.6
377,479 - PP_0314 0.21 -0.5
377,479 - PP_0314 0.21 +0.3
377,482 + +1.1
377,482 + PP_0314 0.21 +0.2
377,483 - PP_0314 0.21 -1.6
377,510 - PP_0314 0.25 -0.1
377,534 + PP_0314 0.28 -0.0
377,534 + PP_0314 0.28 -0.1
377,549 + PP_0314 0.30 +0.4
377,581 + PP_0314 0.35 -0.1
377,581 + PP_0314 0.35 -0.3
377,581 + PP_0314 0.35 +0.0
377,622 + PP_0314 0.40 +0.4
377,684 + PP_0314 0.49 -0.3
377,684 + PP_0314 0.49 +0.1
377,684 + PP_0314 0.49 -0.1
377,685 - PP_0314 0.49 +0.1
377,685 - PP_0314 0.49 -0.3
377,685 - PP_0314 0.49 -0.3
377,689 - PP_0314 0.50 +0.1
377,690 + PP_0314 0.50 +0.0
377,690 + PP_0314 0.50 -0.0
377,690 + PP_0314 0.50 -0.1
377,690 + PP_0314 0.50 +0.2
377,690 + PP_0314 0.50 -0.1
377,691 - PP_0314 0.50 -0.2
377,691 - PP_0314 0.50 +0.1
377,691 - PP_0314 0.50 +0.2
377,716 + PP_0314 0.53 +0.3
377,716 + PP_0314 0.53 -0.4
377,721 + PP_0314 0.54 +0.2
377,721 + PP_0314 0.54 -0.4
377,721 + PP_0314 0.54 +0.2
377,722 - PP_0314 0.54 +0.1
377,722 - PP_0314 0.54 -0.0
377,745 + PP_0314 0.57 -0.0
377,745 + PP_0314 0.57 +0.4
377,746 - PP_0314 0.57 -0.4
377,746 - PP_0314 0.57 -0.2
377,783 - PP_0314 0.62 +0.2
377,868 + PP_0314 0.74 -0.0
377,868 + PP_0314 0.74 -0.3
377,868 + PP_0314 0.74 +0.2
377,869 - PP_0314 0.74 +0.3
377,869 - PP_0314 0.74 +0.1
377,869 - PP_0314 0.74 +0.2
377,874 + PP_0314 0.75 +0.1
377,875 - PP_0314 0.75 -0.1
377,875 - PP_0314 0.75 -0.3
377,895 + PP_0314 0.78 +0.0
377,896 - PP_0314 0.78 -0.0
377,965 + PP_0314 0.87 -0.1
377,966 - PP_0314 0.87 +0.6
377,966 - PP_0314 0.87 +0.0
377,966 - PP_0314 0.87 -0.3
378,028 + +0.0
378,028 + -0.1
378,028 + -0.8
378,035 + +0.1
378,035 + +0.0
378,036 - -0.2
378,036 - -0.1
378,036 - -0.1
378,040 - -0.2
378,048 - +0.4
378,120 + -0.2
378,121 - -0.2
378,124 - -0.1
378,124 - -0.4
378,124 - -0.3
378,124 - +0.2
378,147 + -0.1
378,147 + +0.8
378,192 + -0.6
378,193 - +0.3
378,193 - -0.6
378,193 - -0.0
378,226 - -0.5
378,348 + PP_0315 0.17 -0.2
378,769 - PP_0315 0.50 -0.2
378,813 + PP_0315 0.53 +0.7
378,823 + PP_0315 0.54 -0.2
378,823 + PP_0315 0.54 +0.7
378,824 - PP_0315 0.54 +0.1
378,858 + PP_0315 0.57 +0.0
378,858 + PP_0315 0.57 -0.1
378,858 + PP_0315 0.57 +0.1
378,859 - PP_0315 0.57 +0.2
378,870 + PP_0315 0.58 +0.1
378,870 + PP_0315 0.58 -0.7
378,870 + PP_0315 0.58 +0.5
378,870 + PP_0315 0.58 -0.1
378,870 + PP_0315 0.58 +0.5
378,870 + PP_0315 0.58 +0.0
378,871 - PP_0315 0.58 +0.5
378,871 - PP_0315 0.58 +0.1
378,871 - PP_0315 0.58 -0.5
378,871 - PP_0315 0.58 -0.2
379,041 + PP_0315 0.71 +0.1
379,041 + PP_0315 0.71 +0.4
379,041 + PP_0315 0.71 +0.0
379,042 - PP_0315 0.71 +0.0
379,042 - PP_0315 0.71 +0.3
379,203 + PP_0315 0.84 -0.2
379,203 + PP_0315 0.84 -0.4
379,203 + PP_0315 0.84 +0.3
379,203 + PP_0315 0.84 +0.1
379,204 - PP_0315 0.84 -0.1
379,204 - PP_0315 0.84 +0.0
379,204 - PP_0315 0.84 -0.8
379,255 + PP_0315 0.88 +0.4
379,256 - PP_0315 0.88 -0.1
379,302 + +0.1
379,303 - +0.3
379,324 - -0.6
379,419 + -0.2
379,419 + -0.3
379,420 - +0.4
379,420 - -0.2
379,689 - +0.0
379,914 + PP_0316 0.19 +0.8
379,914 + PP_0316 0.19 +0.6
380,091 + PP_0316 0.35 +0.2
380,091 + PP_0316 0.35 -0.1
380,111 + PP_0316 0.37 -0.3
380,145 + PP_0316 0.40 -0.3
380,145 + PP_0316 0.40 -0.7
380,146 - PP_0316 0.40 +0.2
380,211 + PP_0316 0.46 -0.3
380,211 + PP_0316 0.46 +0.3
380,212 - PP_0316 0.46 +0.2
380,212 - PP_0316 0.46 +0.3
380,317 - PP_0316 0.55 -0.1
380,355 + PP_0316 0.59 +0.3
380,356 - PP_0316 0.59 +0.6
380,356 - PP_0316 0.59 +0.2
380,356 - PP_0316 0.59 -0.0
380,356 - PP_0316 0.59 +0.2
380,394 + PP_0316 0.62 +0.1
380,394 + PP_0316 0.62 +0.6

Or see this region's nucleotide sequence