Experiment: Apigenin 50 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0674 and PP_0675 are separated by 212 nucleotides PP_0675 and PP_0676 are separated by 59 nucleotides PP_0676 and PP_0677 are separated by 67 nucleotides
PP_0674: PP_0674 - ADP/ATP ratio sensor and inhibitor of translation, at 786,883 to 788,550
_0674
PP_0675: PP_0675 - glutamate dehydrogenase, NADP-dependent, at 788,763 to 790,112
_0675
PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669
_0676
PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093
_0677
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -1
0
1 at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.879 kb on + strand, within PP_0674 at 787.965 kb on + strand, within PP_0674 at 787.966 kb on - strand, within PP_0674 at 788.039 kb on + strand, within PP_0674 at 788.039 kb on + strand, within PP_0674 at 788.140 kb on + strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.157 kb on + strand, within PP_0674 at 788.157 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.457 kb on + strand at 788.458 kb on - strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.525 kb on + strand at 788.618 kb on - strand at 788.653 kb on - strand at 788.721 kb on + strand at 788.721 kb on + strand at 788.722 kb on - strand at 788.722 kb on - strand at 788.742 kb on - strand at 788.898 kb on + strand, within PP_0675 at 788.898 kb on + strand, within PP_0675 at 789.036 kb on + strand, within PP_0675 at 789.036 kb on + strand, within PP_0675 at 789.228 kb on + strand, within PP_0675 at 789.256 kb on + strand, within PP_0675 at 789.257 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.367 kb on - strand, within PP_0675 at 789.414 kb on + strand, within PP_0675 at 789.415 kb on - strand, within PP_0675 at 789.452 kb on + strand, within PP_0675 at 789.501 kb on + strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.512 kb on + strand, within PP_0675 at 789.512 kb on + strand, within PP_0675 at 789.513 kb on - strand, within PP_0675 at 789.563 kb on + strand, within PP_0675 at 789.563 kb on + strand, within PP_0675 at 789.564 kb on - strand, within PP_0675 at 789.564 kb on - strand, within PP_0675 at 789.570 kb on + strand, within PP_0675 at 789.571 kb on - strand, within PP_0675 at 789.571 kb on - strand, within PP_0675 at 789.642 kb on - strand, within PP_0675 at 789.642 kb on - strand, within PP_0675 at 789.777 kb on - strand, within PP_0675 at 789.785 kb on + strand, within PP_0675 at 789.786 kb on - strand, within PP_0675 at 789.786 kb on - strand, within PP_0675 at 789.818 kb on + strand, within PP_0675 at 789.836 kb on + strand, within PP_0675 at 789.837 kb on - strand, within PP_0675 at 790.012 kb on - strand at 790.041 kb on + strand at 790.042 kb on - strand at 790.042 kb on - strand at 790.203 kb on - strand at 790.203 kb on - strand at 790.391 kb on + strand, within PP_0676 at 790.399 kb on + strand, within PP_0676 at 790.452 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.671 kb on + strand at 790.671 kb on + strand at 790.671 kb on + strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.750 kb on + strand at 790.751 kb on - strand at 790.823 kb on - strand, within PP_0677 at 790.892 kb on - strand, within PP_0677 at 790.910 kb on - strand, within PP_0677 at 790.917 kb on + strand, within PP_0677 at 791.093 kb on + strand at 791.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Apigenin 50 ug/ml remove 787,816 + PP_0674 0.56 +0.3 787,816 + PP_0674 0.56 +0.2 787,816 + PP_0674 0.56 +0.3 787,816 + PP_0674 0.56 +0.2 787,879 + PP_0674 0.60 +0.1 787,965 + PP_0674 0.65 -0.0 787,966 - PP_0674 0.65 +0.4 788,039 + PP_0674 0.69 -0.0 788,039 + PP_0674 0.69 +0.3 788,140 + PP_0674 0.75 -0.4 788,141 - PP_0674 0.75 -0.1 788,141 - PP_0674 0.75 +0.1 788,141 - PP_0674 0.75 +0.2 788,157 + PP_0674 0.76 -0.3 788,157 + PP_0674 0.76 +0.3 788,161 + PP_0674 0.77 -0.3 788,161 + PP_0674 0.77 +0.4 788,161 + PP_0674 0.77 -0.1 788,161 + PP_0674 0.77 -0.3 788,161 + PP_0674 0.77 -0.2 788,161 + PP_0674 0.77 +0.1 788,161 + PP_0674 0.77 +0.0 788,162 - PP_0674 0.77 -0.4 788,162 - PP_0674 0.77 -0.3 788,162 - PP_0674 0.77 -0.1 788,162 - PP_0674 0.77 +0.0 788,162 - PP_0674 0.77 +0.0 788,457 + -0.4 788,458 - +0.1 788,461 + +0.4 788,461 + -0.2 788,461 + +0.1 788,461 + +0.2 788,462 - -0.1 788,462 - -0.1 788,462 - -0.2 788,462 - +0.1 788,525 + +0.4 788,618 - +0.1 788,653 - -0.2 788,721 + +0.6 788,721 + -1.0 788,722 - -0.3 788,722 - -0.4 788,742 - -0.2 788,898 + PP_0675 0.10 +0.4 788,898 + PP_0675 0.10 -0.1 789,036 + PP_0675 0.20 -0.5 789,036 + PP_0675 0.20 +0.1 789,228 + PP_0675 0.34 +0.4 789,256 + PP_0675 0.37 +0.3 789,257 - PP_0675 0.37 +0.0 789,313 - PP_0675 0.41 -0.3 789,313 - PP_0675 0.41 -0.1 789,313 - PP_0675 0.41 -0.2 789,367 - PP_0675 0.45 +0.3 789,414 + PP_0675 0.48 +0.4 789,415 - PP_0675 0.48 +0.4 789,452 + PP_0675 0.51 -0.2 789,501 + PP_0675 0.55 +0.1 789,502 - PP_0675 0.55 +0.1 789,502 - PP_0675 0.55 -0.3 789,502 - PP_0675 0.55 -0.1 789,512 + PP_0675 0.55 +0.3 789,512 + PP_0675 0.55 -0.3 789,513 - PP_0675 0.56 -0.1 789,563 + PP_0675 0.59 -0.1 789,563 + PP_0675 0.59 -0.2 789,564 - PP_0675 0.59 -0.0 789,564 - PP_0675 0.59 +0.0 789,570 + PP_0675 0.60 +0.2 789,571 - PP_0675 0.60 +0.3 789,571 - PP_0675 0.60 -0.0 789,642 - PP_0675 0.65 -0.3 789,642 - PP_0675 0.65 -0.5 789,777 - PP_0675 0.75 +0.3 789,785 + PP_0675 0.76 +0.5 789,786 - PP_0675 0.76 -0.3 789,786 - PP_0675 0.76 -0.0 789,818 + PP_0675 0.78 +0.1 789,836 + PP_0675 0.79 +0.1 789,837 - PP_0675 0.80 -0.1 790,012 - -0.4 790,041 + -0.1 790,042 - -0.0 790,042 - -0.7 790,203 - -0.8 790,203 - +0.1 790,391 + PP_0676 0.44 -1.2 790,399 + PP_0676 0.46 +0.2 790,452 + PP_0676 0.56 +0.1 790,584 + PP_0676 0.83 +0.1 790,584 + PP_0676 0.83 -0.1 790,585 - PP_0676 0.83 +0.2 790,585 - PP_0676 0.83 -0.1 790,585 - PP_0676 0.83 -0.3 790,585 - PP_0676 0.83 -0.2 790,585 - PP_0676 0.83 +0.0 790,671 + -0.7 790,671 + +0.2 790,671 + -0.0 790,672 - +0.0 790,672 - -0.1 790,672 - -0.5 790,672 - -0.4 790,672 - +0.9 790,672 - +0.2 790,750 + -0.6 790,751 - +0.1 790,823 - PP_0677 0.24 +0.2 790,892 - PP_0677 0.43 -0.3 790,910 - PP_0677 0.48 +0.0 790,917 + PP_0677 0.50 +0.1 791,093 + +0.0 791,093 + -0.4
Or see this region's nucleotide sequence