Strain Fitness in Pseudomonas putida KT2440 around PP_3618

Experiment: Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 1 vol%
4,111,240	-				+0.0
4,111,375	-		PP_3617	0.23	+0.3
4,111,375	-		PP_3617	0.23	+0.1
4,111,405	-		PP_3617	0.26	-0.8
4,111,520	+		PP_3617	0.39	+0.2
4,111,520	+		PP_3617	0.39	+0.2
4,111,530	+		PP_3617	0.40	-0.3
4,111,580	-		PP_3617	0.45	-0.0
4,111,620	-		PP_3617	0.50	-0.3
4,111,620	-		PP_3617	0.50	+0.0
4,112,062	+				+0.0
4,112,062	+				+0.0
4,112,062	+				-0.4
4,112,062	+				+0.1
4,112,062	+				+0.5
4,112,062	+				-0.5
4,112,062	+				-0.2
4,112,062	+				+0.4
4,112,063	-				+0.7
4,112,063	-				-0.0
4,112,063	-				-0.3
4,112,063	-				+0.2
4,112,141	+				-0.6
4,112,142	-				-0.2
4,112,262	+				+0.2
4,112,432	-		PP_3618	0.24	-0.4
4,112,446	-		PP_3618	0.26	-0.3
4,112,510	-		PP_3618	0.33	+0.1
4,112,566	+		PP_3618	0.39	+0.2
4,112,567	-		PP_3618	0.39	-0.2
4,112,585	+		PP_3618	0.41	-0.1
4,112,591	+		PP_3618	0.42	+0.5
4,112,666	-		PP_3618	0.50	-0.5
4,112,666	-		PP_3618	0.50	+0.0
4,112,666	-		PP_3618	0.50	-0.3
4,112,666	-		PP_3618	0.50	-0.2
4,113,183	+				-0.1
4,113,183	+				+0.2
4,113,184	-				-0.1
4,113,184	-				-0.1
4,113,195	+				+0.1
4,113,195	+				-0.6
4,113,196	-				+0.3
4,113,196	-				-0.4
4,113,218	-				+0.2
4,113,235	+				+0.4
4,113,294	+				+1.5
4,113,452	-		PP_3619	0.11	-0.1
4,113,473	+		PP_3619	0.13	-0.6
4,113,517	-				+0.6
4,113,517	-		PP_3619	0.18	-0.4
4,113,552	+		PP_3619	0.22	-0.2
4,113,604	+		PP_3619	0.28	+0.2
4,113,605	-		PP_3619	0.28	-0.2
4,113,605	-		PP_3619	0.28	-0.0
4,113,737	+		PP_3619	0.42	+0.1
4,113,808	-		PP_3619	0.50	-0.1
4,113,823	-		PP_3619	0.52	-0.3
4,113,823	-		PP_3619	0.52	+0.1