Strain Fitness in Pseudomonas putida KT2440 around PP_1150

Experiment: Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dimethyl Sulfoxide 1 vol%
1,315,723	+		PP_1147	0.48	-0.8
1,315,723	+		PP_1147	0.48	+0.1
1,315,723	+		PP_1147	0.48	-0.2
1,315,724	-		PP_1147	0.48	-0.5
1,315,724	-		PP_1147	0.48	+0.2
1,315,789	-		PP_1147	0.68	-0.5
1,315,862	-		PP_1147	0.90	-0.1
1,316,224	-				-0.3
1,316,409	-				-0.3
1,316,544	+				+0.0
1,316,545	-				+0.1
1,316,545	-				+0.1
1,316,862	-				+0.4
1,316,926	-		PP_1150	0.17	+0.5
1,316,926	-		PP_1150	0.17	-0.0
1,317,020	+		PP_1150	0.22	-0.7
1,317,315	-		PP_1150	0.37	-0.2
1,317,365	-		PP_1150	0.39	-0.3
1,317,520	+		PP_1150	0.47	-0.3
1,317,521	-		PP_1150	0.47	+0.3
1,317,528	+		PP_1150	0.48	+0.0
1,317,529	-				+1.8
1,317,529	-		PP_1150	0.48	+0.0
1,317,529	-		PP_1150	0.48	-0.2
1,317,529	-		PP_1150	0.48	+0.1
1,317,799	+		PP_1150	0.61	-0.4
1,317,952	-		PP_1150	0.69	+0.0
1,317,952	-		PP_1150	0.69	+0.2
1,317,952	-		PP_1150	0.69	+0.4
1,317,952	-		PP_1150	0.69	+0.2
1,317,952	-		PP_1150	0.69	-0.2
1,318,237	+		PP_1150	0.83	-0.4
1,318,363	-		PP_1150	0.89	-0.2
1,318,504	+				+0.3
1,318,505	-				-0.1
1,318,612	+		PP_1151	0.26	-0.2
1,318,612	+		PP_1151	0.26	+0.5
1,318,612	+		PP_1151	0.26	+0.5
1,318,612	+		PP_1151	0.26	+0.5
1,318,613	-		PP_1151	0.27	+0.4
1,318,613	-		PP_1151	0.27	-0.1
1,318,742	+		PP_1151	0.89	+0.8
1,318,742	+		PP_1151	0.89	-0.3
1,318,743	-		PP_1151	0.89	+0.2
1,318,743	-		PP_1151	0.89	+0.5
1,318,743	-		PP_1151	0.89	+1.0
1,318,760	+				+0.1
1,318,760	+				+0.4
1,318,761	-				-0.6
1,318,761	-				-0.5
1,318,763	-				+1.1
1,318,791	-				-0.0
1,318,794	+				+0.2
1,318,794	+				+0.2
1,318,794	+				-2.0
1,318,795	-				-0.3
1,318,795	-				-0.2
1,318,795	-				-0.3
1,318,795	-				+0.1
1,318,795	-				-0.1
1,318,855	+				-0.3
1,318,856	-				-0.0
1,318,858	+				-0.1
1,318,858	+				-0.1
1,318,858	+				-0.4
1,318,858	+				+0.3
1,318,858	+				-0.1
1,318,858	+				+0.0
1,318,858	+				+0.1
1,318,859	-				+0.3
1,318,859	-				-0.3
1,318,859	-				-0.8
1,318,859	-				+0.3
1,318,859	-				+0.0
1,318,859	-				-0.2
1,318,859	-				-0.2
1,318,859	-				+0.8
1,318,859	-				+0.1
1,318,859	-				+0.1
1,318,859	-				+0.0
1,318,859	-				-1.2
1,318,995	+		PP_1152	0.25	-0.1
1,318,995	+		PP_1152	0.25	+0.2
1,318,995	+		PP_1152	0.25	+0.2
1,318,995	+		PP_1152	0.25	+0.4
1,319,256	+		PP_1152	0.55	+0.4
1,319,256	+		PP_1152	0.55	+0.3
1,319,256	+		PP_1152	0.55	-0.7
1,319,257	-		PP_1152	0.55	+0.0
1,319,257	-		PP_1152	0.55	-0.6
1,319,287	+		PP_1152	0.59	-0.1
1,319,287	+				-0.2
1,319,288	-		PP_1152	0.59	-0.1
1,319,288	-		PP_1152	0.59	+0.2
1,319,288	-		PP_1152	0.59	-0.3
1,319,338	+		PP_1152	0.64	+0.0
1,319,338	+		PP_1152	0.64	-0.2
1,319,338	+		PP_1152	0.64	-0.5
1,319,339	-		PP_1152	0.65	-0.1
1,319,339	-		PP_1152	0.65	+0.4
1,319,339	-		PP_1152	0.65	-0.4
1,319,339	-		PP_1152	0.65	+0.2
1,319,339	-		PP_1152	0.65	-0.2
1,319,339	-		PP_1152	0.65	-0.3
1,319,546	+		PP_1152	0.88	+0.5