Experiment: Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0231 and PP_0232 overlap by 4 nucleotides PP_0232 and PP_0233 are separated by 13 nucleotides PP_0233 and PP_0234 are separated by 474 nucleotides
PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337
_0231
PP_0232: PP_0232 - ATP-binding taurine transporter subunit, at 286,334 to 287,122
_0232
PP_0233: PP_0233 - taurine ABC transporter periplasmic binding subunit, at 287,136 to 288,107
_0233
PP_0234: PP_0234 - outer-membrane porin E, at 288,582 to 289,916
_0234
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1 at 286.218 kb on + strand, within PP_0231 at 286.512 kb on - strand, within PP_0232 at 287.085 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.165 kb on - strand at 287.165 kb on - strand at 287.288 kb on - strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.355 kb on + strand, within PP_0233 at 287.356 kb on - strand, within PP_0233 at 287.408 kb on - strand, within PP_0233 at 287.495 kb on + strand, within PP_0233 at 287.496 kb on - strand, within PP_0233 at 287.581 kb on + strand, within PP_0233 at 287.581 kb on + strand, within PP_0233 at 287.667 kb on - strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.698 kb on + strand, within PP_0233 at 287.699 kb on - strand, within PP_0233 at 287.699 kb on - strand, within PP_0233 at 287.969 kb on - strand, within PP_0233 at 288.171 kb on + strand at 288.216 kb on - strand at 288.278 kb on - strand at 288.357 kb on - strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.362 kb on - strand at 288.362 kb on - strand at 288.409 kb on + strand at 288.421 kb on + strand at 288.446 kb on - strand at 288.446 kb on - strand at 288.446 kb on - strand at 288.467 kb on + strand at 288.482 kb on + strand at 288.482 kb on + strand at 288.483 kb on - strand at 288.502 kb on + strand at 288.550 kb on + strand at 288.550 kb on + strand at 288.550 kb on + strand at 288.562 kb on - strand at 288.568 kb on + strand at 288.569 kb on - strand at 288.569 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.586 kb on - strand at 288.693 kb on + strand at 288.693 kb on + strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.694 kb on - strand at 288.763 kb on - strand, within PP_0234 at 288.791 kb on - strand, within PP_0234 at 288.791 kb on - strand, within PP_0234 at 288.929 kb on + strand, within PP_0234 at 288.967 kb on - strand, within PP_0234 at 288.967 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234 at 288.987 kb on - strand, within PP_0234
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 1 vol% remove 286,218 + PP_0231 0.86 +0.2 286,512 - PP_0232 0.23 +0.0 287,085 + +0.2 287,164 + +0.2 287,164 + -0.3 287,164 + +0.1 287,165 - +0.0 287,165 - -0.1 287,288 - PP_0233 0.16 +0.4 287,355 + PP_0233 0.23 +0.3 287,355 + PP_0233 0.23 +0.5 287,355 + PP_0233 0.23 +0.1 287,355 + PP_0233 0.23 -0.1 287,355 + PP_0233 0.23 +0.1 287,356 - PP_0233 0.23 +0.1 287,408 - PP_0233 0.28 -0.0 287,495 + PP_0233 0.37 -0.2 287,496 - PP_0233 0.37 +0.4 287,581 + PP_0233 0.46 -0.5 287,581 + PP_0233 0.46 +0.0 287,667 - PP_0233 0.55 -0.2 287,698 + PP_0233 0.58 -0.0 287,698 + PP_0233 0.58 -0.1 287,698 + PP_0233 0.58 +0.3 287,698 + PP_0233 0.58 -0.0 287,699 - PP_0233 0.58 +0.1 287,699 - PP_0233 0.58 +0.4 287,969 - PP_0233 0.86 -0.3 288,171 + +0.3 288,216 - -0.4 288,278 - +0.1 288,357 - -0.0 288,359 + +0.3 288,359 + -0.3 288,359 + -0.9 288,360 - +0.1 288,360 - -1.1 288,362 - +0.1 288,362 - -0.6 288,409 + +0.2 288,421 + +0.3 288,446 - +1.3 288,446 - +0.3 288,446 - -0.2 288,467 + +0.1 288,482 + -0.2 288,482 + -0.6 288,483 - +0.0 288,502 + -0.1 288,550 + -0.2 288,550 + -1.0 288,550 + -0.0 288,562 - +0.1 288,568 + -0.1 288,569 - -0.1 288,569 - +0.0 288,586 - +0.7 288,586 - -0.4 288,586 - +0.2 288,586 - -0.2 288,693 + +1.4 288,693 + +0.2 288,694 - -0.2 288,694 - -0.3 288,694 - -0.5 288,694 - +0.2 288,763 - PP_0234 0.14 -0.2 288,791 - PP_0234 0.16 -1.6 288,791 - PP_0234 0.16 -0.2 288,929 + PP_0234 0.26 +0.0 288,967 - PP_0234 0.29 -0.2 288,967 - PP_0234 0.29 -0.5 288,987 - PP_0234 0.30 +0.5 288,987 - PP_0234 0.30 -0.1 288,987 - PP_0234 0.30 -0.2
Or see this region's nucleotide sequence