Experiment: LB 42C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0622 and PP_0623 are separated by 147 nucleotides PP_0623 and PP_0624 overlap by 4 nucleotides PP_0624 and PP_0625 are separated by 249 nucleotides
PP_0622: PP_0622 - Outer membrane protein assembly factor BamD, at 727,345 to 728,364
_0622
PP_0623: PP_0623 - 23S rRNA pseudouridine(1911,1915,1917) synthase, at 728,512 to 729,474
_0623
PP_0624: PP_0624 - Uncharacterized protein YfiH, at 729,471 to 730,211
_0624
PP_0625: PP_0625 - Chaperone protein ClpB, at 730,461 to 733,025
_0625
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1 at 727.643 kb on + strand, within PP_0622 at 728.416 kb on - strand at 728.416 kb on - strand at 728.416 kb on - strand at 728.771 kb on - strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.266 kb on - strand, within PP_0623 at 729.283 kb on - strand, within PP_0623 at 730.056 kb on - strand, within PP_0624 at 730.056 kb on - strand, within PP_0624 at 730.057 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.108 kb on - strand, within PP_0624 at 730.152 kb on + strand at 730.152 kb on + strand at 730.210 kb on - strand at 730.280 kb on + strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.377 kb on + strand at 730.377 kb on + strand at 730.378 kb on - strand at 730.378 kb on - strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.383 kb on + strand at 730.383 kb on + strand at 730.384 kb on - strand at 730.408 kb on + strand at 730.408 kb on + strand at 730.446 kb on - strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 42C remove 727,643 + PP_0622 0.29 -0.6 728,416 - -0.2 728,416 - +0.3 728,416 - -0.1 728,771 - PP_0623 0.27 -0.2 729,019 + PP_0623 0.53 -0.1 729,019 + PP_0623 0.53 -2.6 729,266 - PP_0623 0.78 +0.6 729,283 - PP_0623 0.80 +0.1 730,056 - PP_0624 0.79 -0.1 730,056 - PP_0624 0.79 +0.0 730,057 + PP_0624 0.79 -0.5 730,059 + PP_0624 0.79 -0.4 730,059 + PP_0624 0.79 -0.6 730,059 + PP_0624 0.79 +0.0 730,059 + PP_0624 0.79 +0.3 730,059 + PP_0624 0.79 +0.1 730,060 - PP_0624 0.79 -0.5 730,060 - PP_0624 0.79 -1.0 730,060 - PP_0624 0.79 +0.2 730,060 - PP_0624 0.79 +0.7 730,060 - PP_0624 0.79 -0.3 730,108 - PP_0624 0.86 -0.9 730,152 + -0.3 730,152 + -0.1 730,210 - +0.4 730,280 + -1.3 730,281 - +0.0 730,281 - +0.1 730,281 - -0.4 730,377 + -0.3 730,377 + -0.0 730,378 - -1.0 730,378 - -1.1 730,381 + +0.1 730,381 + -0.0 730,381 + +0.1 730,382 - -1.4 730,382 - -0.7 730,382 - -1.0 730,383 + +0.2 730,383 + -0.5 730,384 - -0.7 730,408 + -0.6 730,408 + +0.0 730,446 - -1.2 730,455 + -0.6 730,455 + -1.4 730,455 + -1.5 730,455 + -0.6 730,455 + -0.6 730,456 - -0.6 730,456 - -1.6 730,456 - -1.0 730,456 - -1.3 730,456 - -0.7 730,456 - -1.9 730,456 - -1.9 730,456 - -1.2 730,468 + -0.4
Or see this region's nucleotide sequence