Strain Fitness in Pseudomonas putida KT2440 around PP_0354

Experiment: LB 42C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0352 and PP_0353 are separated by 147 nucleotidesPP_0353 and PP_0354 overlap by 4 nucleotidesPP_0354 and PP_0355 are separated by 92 nucleotidesPP_0355 and PP_0356 are separated by 46 nucleotides PP_0352: PP_0352 - RNA polymerase sigma-70 factor, ECF subfamily, at 429,003 to 429,521 _0352 PP_0353: PP_0353 - Exonuclease, at 429,669 to 430,379 _0353 PP_0354: PP_0354 - CBS domain protein, at 430,376 to 432,313 _0354 PP_0355: PP_0355 - Response regulator, at 432,406 to 432,975 _0355 PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199 _0356 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -2 -1 0 1at 429.476 kb on - strandat 429.641 kb on + strandat 429.642 kb on - strandat 429.664 kb on + strandat 429.665 kb on - strandat 429.670 kb on + strandat 429.670 kb on + strandat 429.671 kb on - strandat 430.104 kb on + strand, within PP_0353at 430.104 kb on + strand, within PP_0353at 430.105 kb on - strand, within PP_0353at 430.105 kb on - strand, within PP_0353at 430.105 kb on - strand, within PP_0353at 430.206 kb on + strand, within PP_0353at 430.207 kb on - strand, within PP_0353at 430.207 kb on - strand, within PP_0353at 430.277 kb on + strand, within PP_0353at 430.277 kb on + strand, within PP_0353at 430.277 kb on + strand, within PP_0353at 430.277 kb on + strand, within PP_0353at 430.277 kb on + strand, within PP_0353at 430.278 kb on - strand, within PP_0353at 430.278 kb on - strand, within PP_0353at 430.281 kb on + strand, within PP_0353at 430.282 kb on - strand, within PP_0353at 430.282 kb on - strand, within PP_0353at 430.379 kb on + strandat 430.379 kb on + strandat 430.379 kb on + strandat 430.380 kb on - strandat 430.380 kb on - strandat 430.380 kb on - strandat 430.380 kb on - strandat 430.491 kb on + strandat 430.491 kb on + strandat 430.508 kb on + strandat 430.509 kb on - strandat 430.554 kb on + strandat 430.554 kb on + strandat 430.554 kb on + strandat 430.555 kb on - strandat 430.555 kb on - strandat 430.566 kb on + strandat 430.567 kb on - strandat 430.630 kb on + strand, within PP_0354at 430.631 kb on - strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.643 kb on + strand, within PP_0354at 430.644 kb on - strand, within PP_0354at 430.906 kb on - strand, within PP_0354at 431.064 kb on + strand, within PP_0354at 431.064 kb on + strand, within PP_0354at 431.201 kb on - strand, within PP_0354at 431.260 kb on + strand, within PP_0354at 431.261 kb on - strand, within PP_0354at 431.261 kb on - strand, within PP_0354at 431.261 kb on - strand, within PP_0354at 431.278 kb on + strand, within PP_0354at 431.278 kb on + strand, within PP_0354at 431.279 kb on - strand, within PP_0354at 431.279 kb on - strand, within PP_0354at 431.279 kb on - strand, within PP_0354at 431.279 kb on - strand, within PP_0354at 431.330 kb on + strand, within PP_0354at 431.330 kb on + strand, within PP_0354at 431.330 kb on + strand, within PP_0354at 431.331 kb on - strand, within PP_0354at 431.331 kb on - strand, within PP_0354at 431.331 kb on - strand, within PP_0354at 431.391 kb on - strand, within PP_0354at 431.391 kb on - strand, within PP_0354at 431.497 kb on + strand, within PP_0354at 431.498 kb on - strand, within PP_0354at 431.498 kb on - strand, within PP_0354at 431.553 kb on + strand, within PP_0354at 431.553 kb on + strand, within PP_0354at 431.602 kb on + strand, within PP_0354at 431.602 kb on + strand, within PP_0354at 431.603 kb on - strand, within PP_0354at 431.603 kb on - strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.647 kb on + strand, within PP_0354at 431.648 kb on - strand, within PP_0354at 431.649 kb on - strand, within PP_0354at 431.831 kb on + strand, within PP_0354at 431.832 kb on - strand, within PP_0354at 431.832 kb on - strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.106 kb on - strand, within PP_0354at 432.106 kb on - strand, within PP_0354at 432.159 kb on + strandat 432.160 kb on - strandat 432.160 kb on - strandat 432.344 kb on - strandat 432.345 kb on + strandat 432.345 kb on + strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.348 kb on - strandat 432.348 kb on - strandat 432.348 kb on - strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.352 kb on - strandat 432.352 kb on - strandat 432.354 kb on - strandat 432.354 kb on - strandat 432.355 kb on + strandat 432.356 kb on - strandat 432.357 kb on + strandat 432.357 kb on + strandat 432.357 kb on + strandat 432.423 kb on + strandat 432.423 kb on + strandat 432.423 kb on + strandat 432.424 kb on - strandat 432.424 kb on - strandat 432.424 kb on - strandat 432.429 kb on + strandat 432.429 kb on + strandat 432.430 kb on - strandat 432.430 kb on - strandat 432.430 kb on - strandat 432.491 kb on + strand, within PP_0355at 432.491 kb on + strand, within PP_0355at 432.491 kb on + strand, within PP_0355at 432.492 kb on - strand, within PP_0355at 432.724 kb on + strand, within PP_0355at 432.725 kb on - strand, within PP_0355at 432.733 kb on + strand, within PP_0355at 432.734 kb on - strand, within PP_0355at 432.744 kb on + strand, within PP_0355at 432.745 kb on - strand, within PP_0355at 432.759 kb on + strand, within PP_0355at 432.993 kb on - strandat 432.993 kb on - strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.110 kb on - strandat 433.110 kb on - strandat 433.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 42C
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429,476 - +0.3
429,641 + +0.3
429,642 - -0.3
429,664 + +0.2
429,665 - -0.1
429,670 + +0.5
429,670 + -0.5
429,671 - -0.5
430,104 + PP_0353 0.61 +0.0
430,104 + PP_0353 0.61 +0.3
430,105 - PP_0353 0.61 +0.7
430,105 - PP_0353 0.61 +0.2
430,105 - PP_0353 0.61 -1.2
430,206 + PP_0353 0.76 -0.1
430,207 - PP_0353 0.76 +0.4
430,207 - PP_0353 0.76 -0.2
430,277 + PP_0353 0.86 +0.2
430,277 + PP_0353 0.86 -0.5
430,277 + PP_0353 0.86 -0.1
430,277 + PP_0353 0.86 -0.4
430,277 + PP_0353 0.86 +0.1
430,278 - PP_0353 0.86 -0.2
430,278 - PP_0353 0.86 -0.4
430,281 + PP_0353 0.86 -0.1
430,282 - PP_0353 0.86 +0.5
430,282 - PP_0353 0.86 +0.1
430,379 + +0.3
430,379 + -0.5
430,379 + -0.0
430,380 - -0.1
430,380 - -0.5
430,380 - +0.4
430,380 - +0.2
430,491 + +0.4
430,491 + +0.2
430,508 + +0.3
430,509 - +0.0
430,554 + -0.3
430,554 + -0.1
430,554 + -0.4
430,555 - -0.5
430,555 - +0.4
430,566 + -0.2
430,567 - -0.1
430,630 + PP_0354 0.13 +0.0
430,631 - PP_0354 0.13 +0.1
430,643 + PP_0354 0.14 +0.1
430,643 + PP_0354 0.14 -0.7
430,643 + PP_0354 0.14 +0.6
430,643 + PP_0354 0.14 +0.4
430,643 + PP_0354 0.14 +0.2
430,643 + PP_0354 0.14 -0.0
430,643 + PP_0354 0.14 +0.3
430,643 + PP_0354 0.14 +0.4
430,644 - PP_0354 0.14 +0.4
430,906 - PP_0354 0.27 -0.3
431,064 + PP_0354 0.36 +0.4
431,064 + PP_0354 0.36 +0.0
431,201 - PP_0354 0.43 -0.4
431,260 + PP_0354 0.46 +0.0
431,261 - PP_0354 0.46 +0.1
431,261 - PP_0354 0.46 -0.2
431,261 - PP_0354 0.46 -0.1
431,278 + PP_0354 0.47 +0.3
431,278 + PP_0354 0.47 -0.6
431,279 - PP_0354 0.47 +0.1
431,279 - PP_0354 0.47 -0.0
431,279 - PP_0354 0.47 +0.2
431,279 - PP_0354 0.47 +0.0
431,330 + PP_0354 0.49 +0.3
431,330 + PP_0354 0.49 +0.1
431,330 + PP_0354 0.49 -0.2
431,331 - PP_0354 0.49 +0.5
431,331 - PP_0354 0.49 -0.4
431,331 - PP_0354 0.49 -0.6
431,391 - PP_0354 0.52 -0.0
431,391 - PP_0354 0.52 -0.4
431,497 + PP_0354 0.58 -0.4
431,498 - PP_0354 0.58 -0.3
431,498 - PP_0354 0.58 -2.5
431,553 + PP_0354 0.61 +0.1
431,553 + PP_0354 0.61 -0.2
431,602 + PP_0354 0.63 -0.2
431,602 + PP_0354 0.63 +0.2
431,603 - PP_0354 0.63 -0.1
431,603 - PP_0354 0.63 +0.0
431,606 + PP_0354 0.63 -0.1
431,606 + PP_0354 0.63 -0.3
431,606 + PP_0354 0.63 -0.2
431,606 + PP_0354 0.63 -1.1
431,606 + PP_0354 0.63 -0.4
431,607 - PP_0354 0.64 +0.1
431,607 - PP_0354 0.64 -0.0
431,607 - PP_0354 0.64 +0.0
431,647 + PP_0354 0.66 -0.5
431,648 - PP_0354 0.66 +0.1
431,649 - PP_0354 0.66 -0.1
431,831 + PP_0354 0.75 +1.1
431,832 - PP_0354 0.75 +0.5
431,832 - PP_0354 0.75 +0.1
432,105 + PP_0354 0.89 -0.3
432,105 + PP_0354 0.89 -0.2
432,105 + PP_0354 0.89 +0.4
432,106 - PP_0354 0.89 +0.7
432,106 - PP_0354 0.89 -0.3
432,159 + -0.2
432,160 - -0.3
432,160 - -0.9
432,344 - +0.3
432,345 + -0.0
432,345 + -0.1
432,346 - -0.7
432,346 - -0.0
432,346 - +0.8
432,346 - +0.2
432,347 + +0.1
432,347 + -0.3
432,347 + -0.2
432,347 + +0.1
432,348 - -0.1
432,348 - +0.1
432,348 - -0.3
432,351 + -0.1
432,351 + -0.2
432,351 + -0.1
432,351 + +0.0
432,352 - -0.3
432,352 - -0.5
432,354 - -0.2
432,354 - -0.0
432,355 + +0.1
432,356 - -0.3
432,357 + -0.4
432,357 + -0.1
432,357 + +0.0
432,423 + -0.1
432,423 + -0.0
432,423 + +0.1
432,424 - +0.2
432,424 - +0.3
432,424 - +0.1
432,429 + +0.5
432,429 + -0.1
432,430 - -0.1
432,430 - -0.0
432,430 - -0.5
432,491 + PP_0355 0.15 -0.3
432,491 + PP_0355 0.15 +0.4
432,491 + PP_0355 0.15 -0.1
432,492 - PP_0355 0.15 +0.5
432,724 + PP_0355 0.56 +0.4
432,725 - PP_0355 0.56 +0.8
432,733 + PP_0355 0.57 -0.0
432,734 - PP_0355 0.58 +0.8
432,744 + PP_0355 0.59 -0.4
432,745 - PP_0355 0.59 -0.1
432,759 + PP_0355 0.62 -0.1
432,993 - +0.5
432,993 - -0.0
433,023 + -0.6
433,023 + +0.5
433,023 + +0.1
433,023 + -0.1
433,023 + +0.6
433,023 + +0.0
433,024 - -0.0
433,024 - -0.1
433,024 - -0.0
433,024 - +0.1
433,110 - -1.1
433,110 - -0.1
433,171 - +0.1

Or see this region's nucleotide sequence